Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0344 ATGGCTGTGGATGCAAAGAAATCCTTCAATGCTAATGTCGATCTCTCAAAAGGCTGGTCGAGGTTTCACATGAAAGCTGTAGGAAGCTTTCTGTCTCCTGGGCATCTGAATGAGAAGTCTTTTCCATCTTTGCATTTCAGTAGAAGGCAGCAAAAGATGAGCAGCAAGGTAGAAGCCTGTTCAGAATGCACCCGAAGATGCTTACATCTTCATAGAAAGACAGGGAATTTATCATCTGTTACGTCATTCTTCAAAGTGATGTTTGGAGATCACTTTTCTGAAGTTTTGTACTTCCCACCTATGTTTGCTGCTACAGTGTCGAGGTTGGTTAATGAAAAGGTTGTTCTTGAGGATTCTCTTGGACAACAATGGAAGGTAACAGTTTCTAATTGTGAAGGATCCCTTGCCTTTCAAGAAGGATGGAATGCTTTTTCATCAGAGCATAGCCTTGAAATTGGAGATTTTTTGATCTTCAATCGCGTTATGGACTTGCACTTCAATGTAAGTATCTACACGAAAACTGGTTGTGAAAAATTAGAGTTTGCTAAAAAAAGCAATATGAGGAAAAGAACTAGAAGTTCTGGTCCTGTAGTTGAGACAACTAATGAAGGTTTGACAAATCCGCAAGCTTCATACCCCTCTGTGGGTTCTGAATCCAATGTGGCATTATCTCAAGATAAATGTCACATGGCTGGTTCTCGAAACATGAATGTAAACTGGGACAAAAGGCCGAAGTGCTGGAGGAATGATGAGGGGCATGGACCTCTCTGTAAAATAGACGTTGTTGATGATCCATATTGTTTCATCAACCAAAACAAGGATGTGGGACTGGAGGAAAACAGAAGCCCCTTACTTGACTTGTTTTCCATGGAAATGCAGATAGTCAGTCCCTTGATTCCCTCCATCAATGAGAATACCACAAATAATGTTGCTGAGGATGAGTTAAATCCCTCAATTCCTTCCACATCACTGAATGCTGCAATCATTGTCAGCCCAGTTAACAATGCTCCGGTAGATATAAGAGGAGACATGGAAGCATTGCCTTTGAATATATCTGCTAACGAGTTAATTGATAAAAGTCAGTGTTTTGAGAAGGCTGAGATAAAGACGAGTGTCTCTGACAACGATCCTTGCCACGACAAGACTATTGAGGTTCCTTTTATTTCATCTGCAAAAAATTCTGATAGAGATGTTGAGAACTTTTGTGACACGCCATTAAAAATGTTAAAAGACTCCCAGAATGTACCGGCAATATGCAACACACCATCAACAATTACAAGACATGATCAGGGGTCTAACGAGAAACGTACTTCTTCCATCGAACATTGCCGTAGTGTGAAACAGGAGGACTCTTCAAATTCCTTGGAGGTTAAAAAATGGGACGCGACGAAGATCATTAAGAAGGAACCATTGGAAATTAAAACAGAAGTGAACAACTTTGGAGACTGCATTAAGCAAATATTGGAACCAAAAGTCGTTAAAGAGGAGATCTTTGAGACGTCTAACCAAAGTGGTAGAGATAATAATGATGACACTAATAATGAAGATCCGATTGGAACTCCAGCCCATATCTCCTGTATTATAGCTAAAGATACTCTATCTTTTCTGGAGCTGCCAACGAGTTTGCACCTATCATGTTCAAGAGGCCGAAGAAATCCAGAGAAGAAGAAGGTAGTGTTTCTTAGGGATCCTAGGAAGAGATTATGGCCAATTCTTTACCATGAGATGCCTAATGTTAAAGTTCTAACAAGTGGGTGGGAAGCTTTTTGCTCTGCAAATAAAATCCAATCTGGGGACGAGTGTTTGTTTCATGTCGAGGATGAGTTCGAGCGCATATATGAATGTAAAGTTTGGGGGAAATCTTGTTGA 1869 40.34 MAVDAKKSFNANVDLSKGWSRFHMKAVGSFLSPGHLNEKSFPSLHFSRRQQKMSSKVEACSECTRRCLHLHRKTGNLSSVTSFFKVMFGDHFSEVLYFPPMFAATVSRLVNEKVVLEDSLGQQWKVTVSNCEGSLAFQEGWNAFSSEHSLEIGDFLIFNRVMDLHFNVSIYTKTGCEKLEFAKKSNMRKRTRSSGPVVETTNEGLTNPQASYPSVGSESNVALSQDKCHMAGSRNMNVNWDKRPKCWRNDEGHGPLCKIDVVDDPYCFINQNKDVGLEENRSPLLDLFSMEMQIVSPLIPSINENTTNNVAEDELNPSIPSTSLNAAIIVSPVNNAPVDIRGDMEALPLNISANELIDKSQCFEKAEIKTSVSDNDPCHDKTIEVPFISSAKNSDRDVENFCDTPLKMLKDSQNVPAICNTPSTITRHDQGSNEKRTSSIEHCRSVKQEDSSNSLEVKKWDATKIIKKEPLEIKTEVNNFGDCIKQILEPKVVKEEIFETSNQSGRDNNDDTNNEDPIGTPAHISCIIAKDTLSFLELPTSLHLSCSRGRRNPEKKKVVFLRDPRKRLWPILYHEMPNVKVLTSGWEAFCSANKIQSGDECLFHVEDEFERIYECKVWGKSC 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4604348 4609614 + CaPI482276_03g003440.1 Cam03g0344 122610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0344 622 MobiDBLite consensus disorder prediction 421 447 - -
Cam03g0344 622 SMART B3_2 83 174 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 SMART B3_2 535 618 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 ProSiteProfiles B3 DNA-binding domain profile. 81 174 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 CDD B3_DNA 82 171 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 Gene3D - 519 621 IPR015300 -
Cam03g0344 622 Gene3D - 77 176 IPR015300 -
Cam03g0344 622 MobiDBLite consensus disorder prediction 190 217 - -
Cam03g0344 622 CDD B3_DNA 532 604 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 SUPERFAMILY DNA-binding pseudobarrel domain 79 176 IPR015300 -
Cam03g0344 622 PANTHER B3 DOMAIN-CONTAINING 81 605 IPR050655 -
Cam03g0344 622 ProSiteProfiles B3 DNA-binding domain profile. 559 621 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 MobiDBLite consensus disorder prediction 429 447 - -
Cam03g0344 622 SUPERFAMILY DNA-binding pseudobarrel domain 535 609 IPR015300 -
Cam03g0344 622 MobiDBLite consensus disorder prediction 191 217 - -
Cam03g0344 622 Pfam B3 DNA binding domain 550 608 IPR003340 GO:0003677(InterPro)
Cam03g0344 622 Pfam B3 DNA binding domain 83 172 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0344 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51635 PF02362 B3 2.90E-13 CL0405 Cam TF