Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0352 ATGAGTCAAAAGCCAGACGGCGGCGTTGAAATTGGGCCTAAGAAAAGGGGCTTTCCTTTTAGAACTATGGGCCTCCGGCCCACAAGAAAATTTGAAACCAAGATCAAGATCGGAATCAATGGATTTGGAAGAATCGGCAGGTTGGTCGCTAGAGTTGCTTTACAGAGAGACGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCACTGGAAGCACAGTGAGGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAGAAGGCCGTCACTGTTTTTGGCGTCAGAAATCCGGAGGAGATCCCATGGGGTGAGACTGGTGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAGGACAAAGCTGCTGCTCATTTGAAGGGTGGTGCCAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCCCCCATGTTTGTTGTAGGAGTCAACGAGAAGGAATACAAGCCAGAACTTAACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCCAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACGCAATCACTGCCACACAAAAGACTGTTGACGGGCCATCCAGCAAAGACTGGAGGGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCCGTCGGCAAAGTCCTCCCTGCATTGAATGGGAAATTGACTGGAATGTCTTTCCGTGTTCCCACCGTCGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGACATTAAGGCAGCCATCAAGGAAGAGTCTGAGGGAAAATTGAAGGGAATTTTGGGGTACACTGAAGACGATGTTGTGTCCTCTGACTTCGTTGGTGACAGCAGGTCAAGCATCTTCGATGCCAAGGCCGGCATTGCATTGAATGATAACTTTGTGAAACTTGTCTCGTGGTACGACAATGAAGTAGGATACAGTACTCGTGTCGTCGACTTGATTGTCCACATCGCATCTGTCCATGGACATCGACCCACCACTTTCACCTTAATTATTTTGCTCACTTTTCAAGGCTCCCCATTTCTTTCAGCTACCTCCTACGGACCATACATTCCCGTTCCGTCTCACACCAGTTATCCCCTTCATTTGCCACCGACCGCCGTTCCCACTTTCTTGTCGCTTTCTTTGTCTCTGGACTTCAAAACCCTTCCTTCTTCCATTCTCACCCAGTATTCATTTTGCAAACTGTTGACTCCTTGCCTTATCTCTCAAATTCCTTCCAAGATCAAGATTGGAATCAACGGATTTGGAAGGATCGGGAGGTTGGTAGCAAGGGTTGCTCTCCAGAGAAACGATGTTGAACTCGTCGCTGTTAACGACCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAATGGAAGCATCAAGACGTGAAGGTTAAGGATTCTAAGACCCTTCTCTTTGGTGAGCAGCCTGTTACAGTTTTTGGTGTCAGGAATCCAGAGGAGATCCCATGGGGTGAGACTGGAGCTGAGTATATTGTAGAGTCAACTGGTGTTTTCACAGACAAAGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCAGCTCCCAGCAAGGATGCTCCCATGTTTGTTGTGGGAGTCAATGAGAAGGAATACAAACCAGATCTCGATGTTATATCTAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTTGCAAAGGTCATTCATGATAGATTTGGCATTGTTGAGGGTCTGATGACTACTGTTCACTCAATGACTGCCACCCAAAAGACTGTTGATGGACCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTGCCTGCATTGAACGGAAAACTCACCGGTATGGCTTTCCGTGTTCCTACCGTTGATGTCTCAGTAGTTGACCTTACAGTGAGGTTGGAGAAGCCAGCATCGTATGATGATATTAAAGCTGCCATTAAGGAGGAGTCTGAGGGAAAGCTGAAAGGAATTTTGGGTTACACCGAAGATGAGGTGGTGTCCACCGATTTTTTGGGTGACAACAGGTCAAGTATTTTCGACGCCAAGGCCGGGATCGCACTGACCGAACACTTTGTGAAGCTTGTCTCGTGGTACGACAACGAGTTAGGCTACAGTACTCGTGTTATCGACTTGATTGTTCACATTGCTTCTGTCCATTAA 2370 47.13 MSQKPDGGVEIGPKKRGFPFRTMGLRPTRKFETKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHSEVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEVGYSTRVVDLIVHIASVHGHRPTTFTLIILLTFQGSPFLSATSYGPYIPVPSHTSYPLHLPPTAVPTFLSLSLSLDFKTLPSSILTQYSFCKLLTPCLISQIPSKIKIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSKTLLFGEQPVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPDLDVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDDIKAAIKEESEGKLKGILGYTEDEVVSTDFLGDNRSSIFDAKAGIALTEHFVKLVSWYDNELGYSTRVIDLIVHIASVH 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4672511 4679417 + CaPI482276_03g003520.1 Cam03g0352 122618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0352 789 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 605 768 - -
Cam03g0352 789 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 184 347 - -
Cam03g0352 789 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 201 IPR036291 -
Cam03g0352 789 FunFam Glyceraldehyde-3-phosphate dehydrogenase 456 615 - -
Cam03g0352 789 Gene3D - 35 362 - -
Cam03g0352 789 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 565 578 IPR020831 GO:0016620(InterPro)
Cam03g0352 789 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 627 643 IPR020831 GO:0016620(InterPro)
Cam03g0352 789 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 600 618 IPR020831 GO:0016620(InterPro)
Cam03g0352 789 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 724 739 IPR020831 GO:0016620(InterPro)
Cam03g0352 789 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 684 701 IPR020831 GO:0016620(InterPro)
Cam03g0352 789 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 604 611 IPR020830 GO:0016620(InterPro)
Cam03g0352 789 Gene3D - 456 783 - -
Cam03g0352 789 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 30 366 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
Cam03g0352 789 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 183 190 IPR020830 GO:0016620(InterPro)
Cam03g0352 789 SMART gp_dh_n_7 456 606 IPR020828 GO:0051287(InterPro)
Cam03g0352 789 SMART gp_dh_n_7 35 185 IPR020828 GO:0051287(InterPro)
Cam03g0352 789 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 190 347 IPR020829 GO:0016620(InterPro)
Cam03g0352 789 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 611 768 IPR020829 GO:0016620(InterPro)
Cam03g0352 789 FunFam Glyceraldehyde-3-phosphate dehydrogenase 35 194 - -
Cam03g0352 789 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 457 780 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cam03g0352 789 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 36 359 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cam03g0352 789 FunFam Glyceraldehyde-3-phosphate dehydrogenase 605 770 - -
Cam03g0352 789 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 456 559 IPR020828 GO:0051287(InterPro)
Cam03g0352 789 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 35 138 IPR020828 GO:0051287(InterPro)
Cam03g0352 789 Gene3D Dihydrodipicolinate Reductase; domain 2 184 349 - -
Cam03g0352 789 Gene3D Dihydrodipicolinate Reductase; domain 2 605 770 - -
Cam03g0352 789 FunFam Glyceraldehyde-3-phosphate dehydrogenase 184 349 - -
Cam03g0352 789 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 455 622 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0352 K00134 - - csv:101213319 634.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0352 Cam-Chr3:4672511 Cam11g0709 Cam-Chr11:8775049 1.80E-178 dispersed
Cam03g0352 Cam-Chr3:4672511 Cam02g1936 Cam-Chr2:32469381 3.40E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16