Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0395 ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCACCTCTCTCATATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCAGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTCCTGAAACGTCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACCTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACATTCAAAGATTTTCCTTCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCGAATTCTTTACTACGGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGGTGATGGTGGAGGCAGGAGAGTAAGAATACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTCAGCAGCTCCTGGGGGACCATCTCGGAGAAAGAAAGCAGATAAAGATAACCCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1698 47.59 MGCVLGRQTADARLGTSGPPRRRRTTDHLSHIDGVNGDRVKKQTTTLENQGVRQDLDSFSVERRRPSPSLCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATGDGGGRRVRIRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5064311 5067916 - CaPI482276_03g003950.1 Cam03g0395 122661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0395 565 MobiDBLite consensus disorder prediction 510 546 - -
Cam03g0395 565 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Cam03g0395 565 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Cam03g0395 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0395 565 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0395 565 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Cam03g0395 565 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cam03g0395 565 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cam03g0395 565 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Cam03g0395 565 Gene3D Transferase(Phosphotransferase) domain 1 184 423 - -
Cam03g0395 565 MobiDBLite consensus disorder prediction 39 56 - -
Cam03g0395 565 CDD STKc_CDK9_like 101 385 - -
Cam03g0395 565 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0395 565 MobiDBLite consensus disorder prediction 414 494 - -
Cam03g0395 565 MobiDBLite consensus disorder prediction 457 471 - -
Cam03g0395 565 MobiDBLite consensus disorder prediction 17 38 - -
Cam03g0395 565 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0395 565 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0395 Cam-Chr3:5064311 Cam05g0674 Cam-Chr5:5892244 3.40E-203 dispersed
Cam03g0395 Cam-Chr3:5064311 Cam02g1691 Cam-Chr2:29917626 1.90E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85028 PF00069 Pkinase 2.10E-67 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0395 K08819 - csv:101205716 1000.73