Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0396 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAAGACCAACAACAACAACAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGAAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAACACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGAGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATCGTGGCACCACCGGCGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCTGCAAATAATTTTCCCTTAATGGACTCTTCAGCTAATTTGTTTCTATTTCAACAAGGGATAAGCGCAAATAACGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCATTAA 1077 44.01 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQDQQQQQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEHEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPALIDTTPSTTPSPAISAANNFPLMDSSANLFLFQQGISANNGYSQSSQDNVKVSSWDVEDQKRKLLISSGIGDNVCYFH 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5088370 5090213 - CaPI482276_03g003960.1 Cam03g0396 122662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0396 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983(InterPro)
Cam03g0396 358 Gene3D - 170 241 IPR036638 GO:0046983(InterPro)
Cam03g0396 358 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 318 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam03g0396 358 SMART finulus 179 229 IPR011598 GO:0046983(InterPro)
Cam03g0396 358 MobiDBLite consensus disorder prediction 60 76 - -
Cam03g0396 358 FunFam Basic helix-loop-helix transcription factor 170 242 - -
Cam03g0396 358 MobiDBLite consensus disorder prediction 60 155 - -
Cam03g0396 358 CDD bHLH_AtBPE_like 163 248 - -
Cam03g0396 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 239 IPR036638 GO:0046983(InterPro)
Cam03g0396 358 MobiDBLite consensus disorder prediction 89 122 - -
Cam03g0396 358 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983(InterPro)
Cam03g0396 358 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0396 Cam-Chr3:5088370 Cam09g0835 Cam-Chr9:8577032 1.60E-33 dispersed
Cam03g0396 Cam-Chr3:5088370 Cam06g1968 Cam-Chr6:30501636 7.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51638 PF00010 HLH 7.00E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0396 - - - 0.0