Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0398 ATGCTTTCTAGAGTTGGGAACGTTCTTTGGATGGAAAATCGCGACGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACCACAACCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGACAACAAGGACGAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCTCTGCTAATGCCCTCCATAACCATAATCACCACACCGACATCAATGACATTACCTTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTACTCCCTCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTCTTCAATAACATTGACCCATCTCAATTGCGCTTCTTTTTACCCCAAACTCGCACTTTGTCTTCACTTCATAAGGTAATTTCTAACAACCCTTTAGACCATGGATTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAGCCCCAAATGTGTCCCCAATGACTGAAAATTGTTCGGGTTTAGCTGGATTCCAGAGTTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTAGAATCTTTTCCTACAGTGGGAGCTCAGCCAACTCTGTTTCAGAAGAGGGCAGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCATTGGAAAAAATGAAGTGGGTGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCAGATGAATTGCAAGATACTAGCATCGACACATCTCGTTTTAATTACGATTCTGATGACTTTACTGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAATTGGAGTTTGCCCCATCTGGGGCAGCCTTGACGCCGGGTGCAAGCTTCCACCCGCTGACTCCAACTCCGCCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCAAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGACGGGCAGTAAATATACACATGTTTTGTGGTCGTCGACCGGGTCTCTTGCTCTCCACAGTTAGGGCATTAGATAATCTTGGATTGGACATCCAACAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCCGAGCAGATAAAAGCAATTTTATTGGATTCAGTTGGTTTTAATGATTCACAAAGAGCAATTTATCACCCCGTTCAGAGTTGGTCACCAATGAACATTGAAACTCAAGCTTCGACAATCTCAAATACCTAA 1728 45.08 MLSRVGNVLWMENRDDEDSASWTKNNSDHNHLNHPANCSVLDNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPQTRTLSSLHKVISNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPNLCLGSQLTAPNVSPMTENCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPTVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGIGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGAALTPGASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNDSQRAIYHPVQSWSPMNIETQASTISNT 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5118781 5122218 + CaPI482276_03g003980.1 Cam03g0398 122664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0398 575 Gene3D - 353 422 IPR036638 GO:0046983(InterPro)
Cam03g0398 575 SMART finulus 365 414 IPR011598 GO:0046983(InterPro)
Cam03g0398 575 MobiDBLite consensus disorder prediction 327 352 - -
Cam03g0398 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 425 IPR036638 GO:0046983(InterPro)
Cam03g0398 575 MobiDBLite consensus disorder prediction 327 359 - -
Cam03g0398 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983(InterPro)
Cam03g0398 575 CDD bHLH_AtAMS_like 362 426 - -
Cam03g0398 575 Coils Coil 398 418 - -
Cam03g0398 575 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983(InterPro)
Cam03g0398 575 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 316 545 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam03g0398 575 CDD ACT_UUR-ACR-like 479 539 - -
Cam03g0398 575 FunFam BHLH transcription factor 355 423 - -
Cam03g0398 575 Pfam Plant bHLH transcription factor, ACT-like domain 467 539 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1862 Cam-Chr1:32156809 Cam03g0398 Cam-Chr3:5118781 2.20E-32 dispersed
Cam03g0398 Cam-Chr3:5118781 Cam05g1414 Cam-Chr5:16542795 6.00E-139 dispersed
Cam03g0398 Cam-Chr3:5118781 Cam08g1649 Cam-Chr8:22691664 1.30E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51639 PF00010 HLH 2.20E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0398 - - - 0.0