Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0420 ATGCTTAGGGTTTGGGTAATGGCTCTGACAGAGGTGAAAACGCTGTATCTGCAATTTCTTCTGCTTTTCATCCTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCGTAAGTGGGCATTCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAGTGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTCAAATGATTTTGCTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTTGGTTGAAACATGTACTTTAATATTTGGGGGACCAGCAACACCGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCATCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGAGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTACCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGGTCAATAACAAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTTCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATACTTAGATTGGACCATGAGAATGAAAATTGCTACAACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGTGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCGCAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTATTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAAGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTTCCGTCCATGCGCCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACACATCTCACTATGAAGTAA 1710 44.5 MLRVWVMALTEVKTLYLQFLLLFILIWVSRMGVSDTMFNDSVSGHSVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRAFNSSNDFAWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDLVETCTLIFGGPATPFLRDEKCSSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRYLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5226062 5228616 + CaPI482276_03g004200.1 Cam03g0420 122686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0420 569 ProSiteProfiles C-type lectin domain profile. 67 196 IPR001304 -
Cam03g0420 569 Pfam Protein tyrosine and serine/threonine kinase 285 555 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0420 569 SUPERFAMILY Protein kinase-like (PK-like) 251 555 IPR011009 -
Cam03g0420 569 FunFam C-type lectin receptor-like tyrosine-protein kinase 255 353 - -
Cam03g0420 569 Gene3D Phosphorylase Kinase; domain 1 236 353 - -
Cam03g0420 569 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 354 569 - -
Cam03g0420 569 SUPERFAMILY C-type lectin-like 58 197 IPR016187 -
Cam03g0420 569 Pfam Lectin C-type domain 78 196 IPR001304 -
Cam03g0420 569 Gene3D - 41 199 IPR016186 -
Cam03g0420 569 SMART CLECT_2 58 196 IPR001304 -
Cam03g0420 569 Gene3D Transferase(Phosphotransferase) domain 1 354 560 - -
Cam03g0420 569 ProSiteProfiles Protein kinase domain profile. 278 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0420 569 PANTHER OS01G0750732 PROTEIN 168 558 IPR050885 -
Cam03g0420 569 SMART tyrkin_6 281 555 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cam03g0420 569 ProSitePatterns Tyrosine protein kinases specific active-site signature. 400 412 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0420 Cam-Chr3:5226062 Cam06g0920 Cam-Chr6:13690277 8.20E-56 dispersed
Cam03g0420 Cam-Chr3:5226062 Cam07g1316 Cam-Chr7:27531992 1.70E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85031 PF07714 PK_Tyr_Ser-Thr 2.20E-39 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0420 - - - 0.0