Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0451 ATGGCCTCAAAATCCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAGTTCCTCCCTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCGGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACCGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGTTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATTGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTAATCGGCAAACCTTGCTAA 1146 44.07 MASKSSHLLLILLFILSFISSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGVKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCLIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5529484 5531504 + CaPI482276_03g004510.1 Cam03g0451 122717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0451 381 Gene3D - 34 374 IPR012334 -
Cam03g0451 381 Pfam Pectate lyase 115 299 IPR002022 -
Cam03g0451 381 SMART amb_all 108 305 IPR002022 -
Cam03g0451 381 PANTHER PECTATE LYASE 18-RELATED 11 376 IPR045032 GO:0030570(InterPro)
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cam03g0451 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cam03g0451 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0451 Cam-Chr3:5529484 Cam09g1998 Cam-Chr9:34622976 1.30E-121 dispersed
Cam01g2231 Cam-Chr1:34780681 Cam03g0451 Cam-Chr3:5529484 2.20E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0451 K01728 - csv:101211379 734.947