Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0466 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAATATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCGTTGACTTAA 1131 42.79 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5671535 5672665 - CaPI482276_03g004660.1 Cam03g0466 122732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0466 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cam03g0466 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Cam03g0466 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Cam03g0466 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Cam03g0466 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 FunFam ATP synthase gamma chain, chloroplastic 272 375 - -
Cam03g0466 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cam03g0466 376 Gene3D - 123 246 - -
Cam03g0466 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 NCBIfam ATP synthase F1 subunit gamma 55 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cam03g0466 376 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0466 Cam-Chr3:5671535 Cam04g1215 Cam-Chr4:26169482 4.50E-18 dispersed
Cam01g2252 Cam-Chr1:34911769 Cam03g0466 Cam-Chr3:5671535 2.00E-172 wgd
Cam10g0498 Cam-Chr10:7449767 Cam03g0466 Cam-Chr3:5671535 4.00E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0466 K02115 - csv:101214408 670.618