Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0488 ATGTTTGGAGCACATGGTTTCGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTTGGGAGAGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAGAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATGCCCAACATTTGAGAATTGACAATGCACATCTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATGGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATTGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGGTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCAGACCGGAGTTGGGCGGTGGTCGATGTTTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGTTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACCAACTCCTCCTCTACCAACATTGCTGCACTAGACATTTGCGTGGTAACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGTGCTGCTACTGCACACAATTGGACTACATTATCCACCATTGATTCCGACAATGTTCGAGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTACGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCACCCATTGGGGATGATGGGCCTTCAGGAATTCTCGAATTCGGATCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2214 46.43 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVTDAMEAPLGEELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNSSSKYGGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTRIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVGGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDNVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGDDGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5826529 5834001 - CaPI482276_03g004880.1 Cam03g0488 122754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0488 737 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam03g0488 737 SUPERFAMILY Bet v1-like 244 473 - -
Cam03g0488 737 CDD START_ArGLABRA2_like 248 471 - -
Cam03g0488 737 Coils Coil 166 186 - -
Cam03g0488 737 Gene3D - 54 135 - -
Cam03g0488 737 Gene3D - 313 473 IPR023393 -
Cam03g0488 737 Pfam START domain 254 472 IPR002913 GO:0008289(InterPro)
Cam03g0488 737 FunFam Homeobox-leucine zipper protein GLABRA 2 253 471 - -
Cam03g0488 737 SUPERFAMILY Bet v1-like 499 727 - -
Cam03g0488 737 SUPERFAMILY Homeodomain-like 47 119 IPR009057 -
Cam03g0488 737 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289(InterPro)
Cam03g0488 737 FunFam Homeobox-leucine zipper protein HDG1 50 134 - -
Cam03g0488 737 SMART HOX_1 59 122 IPR001356 GO:0003677(InterPro)
Cam03g0488 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 732 IPR042160 -
Cam03g0488 737 SMART START_1 253 472 IPR002913 GO:0008289(InterPro)
Cam03g0488 737 Coils Coil 112 147 - -
Cam03g0488 737 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Cam03g0488 737 CDD homeodomain 60 119 IPR001356 GO:0003677(InterPro)
Cam03g0488 737 Pfam Homeodomain 61 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0971 Cam-Chr2:14250594 Cam03g0488 Cam-Chr3:5826529 1.60E-256 dispersed
Cam03g0488 Cam-Chr3:5826529 Cam06g0223 Cam-Chr6:4022139 3.10E-188 dispersed
Cam01g2268 Cam-Chr1:34996730 Cam03g0488 Cam-Chr3:5826529 8.30E-255 wgd
Cam02g0194 Cam-Chr2:2859260 Cam03g0488 Cam-Chr3:5826529 3.00E-244 wgd
Cam03g0488 Cam-Chr3:5826529 Cam05g1629 Cam-Chr5:23350431 1.70E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51643 PF01852 START 3.30E-48 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0488 K09338 - csv:101212604 1338.17