Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0501 ATGCTCAATTTTCTTACTTTCCTCTTCTTCCTCAATCTCCTTACCCATGGAAACGCTCAGACCCCAGTTCCTTACCCATATCGCAGTTGCTTGTCCGGCAATTTCACTCACAACAGCACCTATCAGTCCAACCTCAATCTTCTCTTTTCAAATCTCTCCACCAACGGCCCCCCAAGAAACAGATTCTTCAATACTTCCATCGGCCGACCCCCAAACGACGCCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACGCCGTCTGTCGTACTTTCTTAGCCACCGCAACCAGAGACGCAGAGCGGCTGTACTGTCCTCTAAGAAAAGGCGCTGTGATTTGGTACGACGAAATCATATTCCGCTATTCCGACCAACCTTTCTTTTCCACGGTTTCCTCAAACCCAAGTATGCAGTTACGGAATACGGGTAATATAGACGTCGACAAGGCTCGATTCAACCAACTAGTCATGTCCACGTTGAGAGCCACCGCGGCTCAGGCGGCGAACGCCTCTTTGGTGGGCAATTTGTTTGCGACCCAGATGGCTAATTTTACAGAAGACCTAACCCTTTACACATTAGCTCAGTGTACCGGCGATTTGTCCAATACGGATTGCGAAGGATGCTTACGCCAAGCTACCAACTCAATTCCAAGTTGTTGTAGTAATAAACGAGGCGGGCGCGTTCTGCTTCCCAGCTGTTATGTTCGTTACGAAGTTGACATGTTTTACGAATTAACGCCGACGAATTCCTTACCGCCTCCGGCAACACCGCCTCTTCTTCCTTCTTCTCCTCCGCCAGGGGAAAGAAGGTCCTCAACGGTGTTAATTGTGGCCATTGTAGCTCCAATTACTGTCTCCATACTGCTCTTTGTAGTGGGATGTTGTTTCCTGCGCCTGAGAGCGAAGAACAGATACTCTGCTGTGAAGGAAGATAGTGTTGTTAATGAGATGACGACTGTGGAATCTCTGCAATTTGATTTCAAAACAATCGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGTGGATTTGGTGCTGTCTTCAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGGCTGTCGAGAGGATCTTTGCAAGGTTCTGAAGAGTTTAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGTTATTGGGATTCTGCTTGGAGGGGGAAGAAAAGATTCTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCTTGTTTGATCTAGAGGGACAGAGGCAGTTGGATTGGTTGAAACGATATAAGATCATCAATGGAATTGCTCGAGGAATATTGTATCTGCATGAAGATTCTCGTCTTAGAATTATTCACCGTGATCTTAAAGTGAGTAACATCTTGTTAGACAAAGATATGAATGCAAAAATTTCAGACTTTGGCATGGCAAGGATTATTCAAATGGATCAAACCCAAGGAAATACAAGTAGGATTGTTGGTACCTATGGTTACATGTCTCCTGAGTATGCAATGCACGGAAATTTCTCAATGAAATCTGATGTGTATAGCTTTGGAGTGTTAGTGTTAGAGATTTTAAGTGGTAAGAAAAACACCACCTTTTACTTGTCAGATCTTGCCGAAGACATTTTGACATATGCTTGGAAATTGTGGAAGGATGGAACGCCATTAGAGTTATTGGATCCAATGTTGAGAGATAATTACTCGAGAAATGAGGTGGTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCTTCCATTGTTCTTATGCTTAATAGTTATTCCGTTACTTTGCCATTGCCTGAAGAGCCAGCATTCTTCATGCGTAGTAAAGACAATCACATTACAATGGGCAGCGATCATTCTACTAATAAGTCTATTCAGTTTTCTGTTAACGAAACATCTATATCTGAGTTGCATCCACGATGA 1983 43.57 MLNFLTFLFFLNLLTHGNAQTPVPYPYRSCLSGNFTHNSTYQSNLNLLFSNLSTNGPPRNRFFNTSIGRPPNDAVYGLFQCRGDVTDAVCRTFLATATRDAERLYCPLRKGAVIWYDEIIFRYSDQPFFSTVSSNPSMQLRNTGNIDVDKARFNQLVMSTLRATAAQAANASLVGNLFATQMANFTEDLTLYTLAQCTGDLSNTDCEGCLRQATNSIPSCCSNKRGGRVLLPSCYVRYEVDMFYELTPTNSLPPPATPPLLPSSPPPGERRSSTVLIVAIVAPITVSILLFVVGCCFLRLRAKNRYSAVKEDSVVNEMTTVESLQFDFKTIEAATNKFSEENRLGEGGFGAVFKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDFFLFDLEGQRQLDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKVSNILLDKDMNAKISDFGMARIIQMDQTQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNTTFYLSDLAEDILTYAWKLWKDGTPLELLDPMLRDNYSRNEVVRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPLPEEPAFFMRSKDNHITMGSDHSTNKSIQFSVNETSISELHPR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5921619 5924652 + CaPI482276_03g005010.1 Cam03g0501 122767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0501 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 160 625 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Cam03g0501 660 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cam03g0501 660 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0501 660 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
Cam03g0501 660 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Cam03g0501 660 SUPERFAMILY Protein kinase-like (PK-like) 323 642 IPR011009 -
Cam03g0501 660 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0501 660 ProSiteProfiles Gnk2-homologous domain profile. 134 243 IPR002902 -
Cam03g0501 660 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Cam03g0501 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0501 660 FunFam Cysteine-rich receptor-like protein kinase 25 136 243 - -
Cam03g0501 660 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Cam03g0501 660 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Cam03g0501 660 Pfam Salt stress response/antifungal 150 239 IPR002902 -
Cam03g0501 660 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Cam03g0501 660 SMART serkin_6 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0501 660 CDD STKc_IRAK 344 610 - -
Cam03g0501 660 Gene3D - 24 128 IPR038408 -
Cam03g0501 660 Gene3D - 135 243 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2286 Cam-Chr1:35117694 Cam03g0501 Cam-Chr3:5921619 1.80E-132 dispersed
Cam01g2287 Cam-Chr1:35123888 Cam03g0501 Cam-Chr3:5921619 3.80E-129 dispersed
Cam02g0182 Cam-Chr2:2767929 Cam03g0501 Cam-Chr3:5921619 1.80E-29 dispersed
Cam03g0501 Cam-Chr3:5921619 Cam03g0507 Cam-Chr3:5943270 6.70E-134 dispersed
Cam03g0503 Cam-Chr3:5935750 Cam03g0501 Cam-Chr3:5921619 3.30E-48 dispersed
Cam03g0509 Cam-Chr3:5951054 Cam03g0501 Cam-Chr3:5921619 5.40E-20 dispersed
Cam05g0449 Cam-Chr5:4030666 Cam03g0501 Cam-Chr3:5921619 1.20E-08 dispersed
Cam06g0174 Cam-Chr6:3618588 Cam03g0501 Cam-Chr3:5921619 9.10E-14 dispersed
Cam06g0749 Cam-Chr6:10084374 Cam03g0501 Cam-Chr3:5921619 4.30E-11 dispersed
Cam03g0499 Cam-Chr3:5912313 Cam03g0501 Cam-Chr3:5921619 1.50E-123 proximal
Cam03g0501 Cam-Chr3:5921619 Cam03g0502 Cam-Chr3:5932206 1.20E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85034 PF07714 PK_Tyr_Ser-Thr 4.80E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0501 - - - 0.0