Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0519 ATGTCAGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCCGAGAAGCCGCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTATACTCTTTCGAGCCAAAATGTTATTCAGGAAATTTTCGAGTCTGTGGGTCAATTTGTCGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGACATCTATGTCAGTACGGGTGACTGGGCGGAGCATTTACTACGCAAAGGTCCATCCGGTTTCAAAGAGTATGTGGAGGAATGTAAGCTCTTAGGATTTGACACTATTGAGCTCAACGTGGGATCACTTGAAGTTCCTGAAGAAACTCTTCTGAGATACGTGCGTTTGATTAAGAACGGTGGCCTTAGGGCTAAGCCTCAGTTCGCAGTGAAGTTCAACAAGTCCGACATTCCCATCAGTGGCAATCGAGCATTTGGAGCTTATATTGTTCCGAGACCACGATCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGGGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATTATGATTGATGCAGATGATGTCAGTAAACATGCCGATTCTCTTCGAGCAGATATTATTGCCAAGATCATTGGGCGTCTTGGTCTAGAGAAAACGATGTTTGAAGCATCGAATCCCAGAACATCAGAGTGGTTTATCAATCATTACGGTCCAAAGGTGAATCTTTTTGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTCCGGGGTCGCAACCTCGATGCTATTAGTATTGAAGGAGTAAAAGTGCTTCTTTGTGGTTATTTTAGAGTTGGCGATAGGCTGAGGTGGAAGGCTTTGGCAAGTGCATGGAGTGAGGCATGTGCGTCTACCACTTCAAGTAAAGTGTTGATTCCAAAAGGAACTTACCAATTAACTCAATCCAACCTTAAAGGCCCTTGCAAAAGCCCTATTGAGGTTCAAATTGAAGGAACATTACAAGCACCGGCCGAACCAAAAGGAGATGGGTTGATCATTTTAGAATATGTTGATCAATTAACGTTATCAGGTACTGGAGTTTTGGATGGCCAAGGAAAAACAGGTTGGGAAAAGAATGATTGCCATCTTAAGAAAATATGCGCCAAACTTCCTATGAATTTGAAGTTTAATTTCATCACTAATTCACTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGGTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGATGGAATTCACTTGAGTAGTTCAGAAGCAATTAACATTCTCAATACCAAAATTGCAACTGGGGATGATTGTATATCTGTGGGAGATAGTAACAAACAGATAGCTATTAGTGATGTTACTTGTGGACCGGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCTGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTCGAATGGTGTCAGGATCAAAACATGGCCAGATTCTGTCGGCTCATTTCCAGCCACTGACATGCATTTCGAAGATATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGCCCATGGAACCAGTGCAACCGAAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCTGTTGCAGTCAAACTTCTTTGCAGTAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACCAAGGTCCAATTATATCTCAATGTTCGAATGTGAACCCCATCGTTTCTGGAGTCCAAAACCCTCGCATCTGTGCCGAACCTGCTTTGGCAAGTGCATGGAGTGAGGCATGTGCGTCTACCACTTCAAGTAAAGTGTTGATTCCAAAAGGAACTTACCAATTAACTCAATCCAACCTTAAAGGCCCTTGCAAAAGCCCTATTGAGGTTCAAATTGAAGGAACATTACAAGCACCGGCCGAACCAAAAGGAGATGGGTTGATCATTTTAGAATATGTTGATCAATTAACGTTATCAGGTACTGGAGTTTTGGATGGCCAAGGAAAAACAGGTTGGGAAAAGAATGATTGCCATCTTAAGAAAATATGCGCCAAACTTCCTATGAATTTGAAGTTTAATTTCATCACTAATTCACTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGGTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGATGGAATTCACTTGAGTAGTTCAGAAGCAATTAACATTCTCAATACCAAAATTGCAACTGGGGATGATTGTATATCTGTGGGAGATAGTAACAAACAGATAGCTATTAGTGATGTTACTTGTGGACCGGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCTGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTCGAATGGTGTCAGGATCAAAACATGGCCAGATTCTGTCGGCTCATTTCCAGCCACTGACATGCATTTCGAAGATATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGCCCATGGAACCAGTGCAACCGAAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCTGTTGCAGTCAAACTTCTTTGCAGTAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACCAAGGTCCAATTATATCTCAATGTTCGAATGTGAACCCCATCGTTTCTGGAGTCCAAAACCCTCGCATCTGTGCCGAACCTGCTTTGGCAAGTGCATGGAGTGAGGCATGTGCGTCTACCACTTCAAGTAAAGTGTTGATTCCAAAAGGAACTTACCAATTAACTCAATCCAACCTTAAAGGCCCTTGCAAAAGCCCTATTGAGGTTCAAATTGAAGGAACATTACAAGCACCGGCCGAACCAAAAGGAGATGGGTTGATCATTTTAGAATATGTTGATCAATTAACGTTATCAGGTACTGGAGTTTTGGATGGCCAAGGAAAAACAGGTTGGGAAAAGAATGATTGCCATCTTAAGAAAATATGCGCCAAACTTCCTATGAATTTGAAGTTTAATTTCATCACTAATTCACTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGGTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGATGGAATTCACTTGAGTAGTTCAGAAGCAATTAACATTCTCAATACCAAAATTGCAACTGGGGATGATTGTATATCTGTGGGAGATAGTAACAAACAGATAGCTATTAGTGATGTTACTTGTGGACCGGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCTGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTCGAATGGTGTCAGGATCAAAACATGGCCAGATTCTGTCGGCTCATTTCCAGCCACTGACATGCATTTCGAAGATATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGCCCATGGAACCAGTGCAACCGAAAGGTTGCATCAAAAATTAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCTGTTGCAGTCAAACTTCTTTGCAGTAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACCAAGGTCCAATTATATCTCAATGTTCGAATGTGAACCCCATCGTTTCTGGAGTCCAAAACCCTCGCATCTGTGCCGAACCTGTGCCCGTCGATTCTCCATCAACTGATTGA 4032 41.27 MSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSSQNVIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDIYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLEVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPRPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHADSLRADIIAKIIGRLGLEKTMFEASNPRTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLDAISIEGVKVLLCGYFRVGDRLRWKALASAWSEACASTTSSKVLIPKGTYQLTQSNLKGPCKSPIEVQIEGTLQAPAEPKGDGLIILEYVDQLTLSGTGVLDGQGKTGWEKNDCHLKKICAKLPMNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTSNGVRIKTWPDSVGSFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNQGPIISQCSNVNPIVSGVQNPRICAEPALASAWSEACASTTSSKVLIPKGTYQLTQSNLKGPCKSPIEVQIEGTLQAPAEPKGDGLIILEYVDQLTLSGTGVLDGQGKTGWEKNDCHLKKICAKLPMNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTSNGVRIKTWPDSVGSFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNQGPIISQCSNVNPIVSGVQNPRICAEPALASAWSEACASTTSSKVLIPKGTYQLTQSNLKGPCKSPIEVQIEGTLQAPAEPKGDGLIILEYVDQLTLSGTGVLDGQGKTGWEKNDCHLKKICAKLPMNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTSNGVRIKTWPDSVGSFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNQGPIISQCSNVNPIVSGVQNPRICAEPVPVDSPSTD 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6012480 6035856 + CaPI482276_03g005190.1 Cam03g0519 122785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0519 1343 ProSitePatterns Polygalacturonase active site. 827 840 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam03g0519 1343 SMART pbh1 1114 1140 IPR006626 -
Cam03g0519 1343 SMART pbh1 1194 1215 IPR006626 -
Cam03g0519 1343 SMART pbh1 797 818 IPR006626 -
Cam03g0519 1343 SMART pbh1 426 452 IPR006626 -
Cam03g0519 1343 SMART pbh1 850 871 IPR006626 -
Cam03g0519 1343 SMART pbh1 453 474 IPR006626 -
Cam03g0519 1343 SMART pbh1 1141 1162 IPR006626 -
Cam03g0519 1343 SMART pbh1 506 527 IPR006626 -
Cam03g0519 1343 SMART pbh1 770 796 IPR006626 -
Cam03g0519 1343 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 13 267 IPR036112 -
Cam03g0519 1343 PANTHER - 984 1318 - -
Cam03g0519 1343 SUPERFAMILY Pectin lyase-like 640 982 IPR011050 -
Cam03g0519 1343 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 14 269 IPR003830 -
Cam03g0519 1343 ProSitePatterns Polygalacturonase active site. 1171 1184 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam03g0519 1343 FunFam Pectin lyase-like superfamily protein 981 1329 - -
Cam03g0519 1343 FunFam Pectin lyase-like superfamily protein 637 979 - -
Cam03g0519 1343 ProSitePatterns Polygalacturonase active site. 483 496 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam03g0519 1343 MobiDBLite consensus disorder prediction 1 20 - -
Cam03g0519 1343 Gene3D - 639 982 IPR012334 -
Cam03g0519 1343 Gene3D - 289 638 IPR012334 -
Cam03g0519 1343 Gene3D - 983 1337 IPR012334 -
Cam03g0519 1343 SUPERFAMILY Pectin lyase-like 984 1332 IPR011050 -
Cam03g0519 1343 Gene3D Aldolase class I 9 275 IPR013785 -
Cam03g0519 1343 SUPERFAMILY Pectin lyase-like 295 638 IPR011050 -
Cam03g0519 1343 FunFam Pectin lyase-like superfamily protein 282 635 - -
Cam03g0519 1343 Pfam Glycosyl hydrolases family 28 994 1319 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam03g0519 1343 Pfam Glycosyl hydrolases family 28 650 969 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cam03g0519 1343 Pfam Glycosyl hydrolases family 28 306 625 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0274 Cam-Chr2:3564482 Cam03g0519 Cam-Chr3:6012480 2.20E-268 dispersed
Cam03g0519 Cam-Chr3:6012480 Cam09g0572 Cam-Chr9:5681910 5.50E-236 dispersed
Cam03g0519 Cam-Chr3:6012480 Cam10g0439 Cam-Chr10:6778811 2.60E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0519 - - - 0.0