Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0538 ATGAAGCCCTTGATGCCGAAAATGACATCCAACTTCAGGCTCAACCATTTGTCCTTGCTCTGTTTCATACCTCTGTTTCTCCCACACTCAACTGCAGTCGACATCTTAAAATCAGGGCAATCCATTAACGACACCCAAGTAATTGTTTCAGCCGCCGAAAAGTTTGAATTGGGATTCTTCACTCAGCCCAAGTCCTCTAGTTTCAAGTATTTAGGAATCTGGTACAAGAGCCTTCCCGACTACGCCGTTTGGGTGGCAAACAGAGACAACCCAATTCTCAACTCCTCTGCCACTCTAAAATTCAATACAGATGGAAACTTGATTCTCGTCAATCAAACAGGTGAAGTTTTTTGGTCTTCAAATTCAACAAGTTCACTTAAAAATCCAATCGCTCAATTGCTAGATACAGGTAATTTCATTCTGAGAGATTCAAATTCACGATCTGACAATCATGTATGGCAGAGTTTTGATTACCCCTTTGATACTCTGTTACCGGAAATGAAACTGGGTTGGGACTCCAAAACAGGGCTTAACCGGAAGTTAACATCAAGAAAGAATGAAAACGATCCGTCCTCTGGAGAATTCAGTTATGAAGTCAACACAGATGGGCTTGCTGAACTTGTGGTTCGTAAAGCAAACAAGACGATGTTTAGGGGAGGACCATGGTTTGGCGATGGTTTTGCCCGACGTCGATCCACCGGAGGGATTTTCATATATAATTCTTCATATGAGGTATCATTTTCATATAATGCTCCAGACAATAACCCATCAAGAGTTGTGTTGGATGCAAGTGGGTCTGTTGAACACTCTATCTGGAGCGAACAGGAGAAAGCATGGCGTAAAACATACACGTTTGAAGGATCTGGCTGCAACGACTACGATTTATGTGGAAATTTTGGTCTTTGTAGCTCTGTCTTAGTAGCAAGCTGTGGCTGTTTAGATGGGTTTAAACAGAAATCAACCCAAAATTTTTCAGATGGGTGTGTGAGAAAGGATGAAAAAATTTGTAGAGAAGGAGAAGGATTTAGAAAGATAAGTGATGTGAAATGGCCAGATTCCAGTGGGAAGTCAGTGAAATTGAAAATGGGTATTCAAAATTGCGAAACAGAGTGCTTGAATGATTGTCTTTGCTTGGCTTATGGCAAACTGGAAATTCCTAATATTGGGTCTGCCTGTGTCACCTGGTTTAACAAATTGATTGATATTAGATTTGTTCGTGATGTTGGAACTGGAGATGATCTCTTTGTGAGAGTGGCTGCTTCAGAATTAGAATGGAGTGAGAGGAGGAAGAGTATAATAGTTCCGGTGGTTGTGCCAATCCTGTCAGTGATAATCTTCTTGGCTTTAATCACCCTTTTTATCATTAGGAATGTAAGAAGAAGAGCTAAAGATAATGGAGTTGCAATCACTGAGGATCTAATTCATGAGAATGAACTTGAGATGCCAATTGGGTTAATTGAAGCTGCGACCAACAATTTCTCAATTTCTAATAAGATAGGAGAAGGGGGTTTTGGACCTGTTTATAAGGGCAGACTCCCATGTGGACAAGAAATTGCGGTAAAGAAGCTAGCCGAAAGATCTCGTCAAGGATTGGAGGAGTTTAAAAATGAGGTCCTTTTCATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCTAACAAAAGTTTGGACTACTTCCTTTTTGACGATGGAAGACGTTGTTTACTCCGTTGGCAAATGAGAATTGATATCATAATTGGCATTGCTCGAGGCCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATTATTCACAGAGATCTCAAAGCTGCCAATATTTTATTAGATAGCGAAATGATGCCAAAAATCTCAGACTTTGGCATTGCACGTATGTTTGGTGAAGGTCAAATGGAAACAAAAACAAATAGAGTTATTGGGACCTACGGTTATATGTCTCCAGAATATGCCATGGAAGGTTTCTTTTCATTCAAATCTGATGTTTATAGCTTTGGAGTTATGGTTTTAGAAATAGTTAGCGGCAAGAGGAACCAAGGTTATTTTATTCACTCGGAACACGAAATGAATCTTCTTGGACACGCATGGAAACTTTGGAATGAAGGAAGGAGCTTGGAATTAGTAGATGGAGTGTTGGGTGATCAATTCCAAGAATATGAAGCACTAAAATACATAAATATTGGACTTTTATGTGTTCAAGCACATCCGAGAGAAAGACCAATTATGTCATCTGTGCTTTCAATGTTAGAAAATGATAACATGTCCTTCATTCATCCAAAAAGACCTGGATTCAATGGGGAAAGATTTTTATTGTATGATATTGATTCATCATTAGATGATAAATCAACTCCTACTTCAAATAATGTTACTATTACCTTGTTAGACGATGGTCGCTAA 2445 39.02 MKPLMPKMTSNFRLNHLSLLCFIPLFLPHSTAVDILKSGQSINDTQVIVSAAEKFELGFFTQPKSSSFKYLGIWYKSLPDYAVWVANRDNPILNSSATLKFNTDGNLILVNQTGEVFWSSNSTSSLKNPIAQLLDTGNFILRDSNSRSDNHVWQSFDYPFDTLLPEMKLGWDSKTGLNRKLTSRKNENDPSSGEFSYEVNTDGLAELVVRKANKTMFRGGPWFGDGFARRRSTGGIFIYNSSYEVSFSYNAPDNNPSRVVLDASGSVEHSIWSEQEKAWRKTYTFEGSGCNDYDLCGNFGLCSSVLVASCGCLDGFKQKSTQNFSDGCVRKDEKICREGEGFRKISDVKWPDSSGKSVKLKMGIQNCETECLNDCLCLAYGKLEIPNIGSACVTWFNKLIDIRFVRDVGTGDDLFVRVAASELEWSERRKSIIVPVVVPILSVIIFLALITLFIIRNVRRRAKDNGVAITEDLIHENELEMPIGLIEAATNNFSISNKIGEGGFGPVYKGRLPCGQEIAVKKLAERSRQGLEEFKNEVLFISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDGRRCLLRWQMRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMMPKISDFGIARMFGEGQMETKTNRVIGTYGYMSPEYAMEGFFSFKSDVYSFGVMVLEIVSGKRNQGYFIHSEHEMNLLGHAWKLWNEGRSLELVDGVLGDQFQEYEALKYINIGLLCVQAHPRERPIMSSVLSMLENDNMSFIHPKRPGFNGERFLLYDIDSSLDDKSTPTSNNVTITLLDDGR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6229228 6232458 - CaPI482276_03g005380.1 Cam03g0538 122804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0538 814 ProSiteProfiles Protein kinase domain profile. 493 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0538 814 Pfam Protein tyrosine and serine/threonine kinase 495 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0538 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Cam03g0538 814 Pfam S-locus glycoprotein domain 217 319 IPR000858 GO:0048544(InterPro)
Cam03g0538 814 ProSiteProfiles Bulb-type lectin domain profile. 33 154 IPR001480 -
Cam03g0538 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0538 814 SMART serkin_6 493 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0538 814 SMART blect_4 39 159 IPR001480 -
Cam03g0538 814 Gene3D Transferase(Phosphotransferase) domain 1 569 775 - -
Cam03g0538 814 Gene3D - 29 156 IPR036426 -
Cam03g0538 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 568 - -
Cam03g0538 814 Pfam PAN-like domain 336 402 IPR003609 -
Cam03g0538 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 156 - -
Cam03g0538 814 PIRSF SRK 5 812 IPR024171 GO:0004674(InterPro)
Cam03g0538 814 CDD PAN_AP_plant 336 419 - -
Cam03g0538 814 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Cam03g0538 814 CDD STKc_IRAK 499 767 - -
Cam03g0538 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 26 779 - -
Cam03g0538 814 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Cam03g0538 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 773 - -
Cam03g0538 814 Pfam D-mannose binding lectin 83 185 IPR001480 -
Cam03g0538 814 SUPERFAMILY Protein kinase-like (PK-like) 482 781 IPR011009 -
Cam03g0538 814 CDD B_lectin 40 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0536 Cam-Chr3:6214220 Cam03g0538 Cam-Chr3:6229228 2.40E-108 dispersed
Cam03g0538 Cam-Chr3:6229228 Cam05g1677 Cam-Chr5:24956488 1.20E-196 dispersed
Cam03g0537 Cam-Chr3:6221188 Cam03g0538 Cam-Chr3:6229228 8.10E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85043 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0538 - - - 0.0