Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0540 ATGAAACCCACCACCAACACCATTCCATTAATCCTTCTTCTCCTCTGCTTTGTTTTGAAATTTTCCAGCAGCATAGATACGATCACATCTACACAATTCCTCAAAGATCCCGAAGCTGTATTGTCCAATCGTGGCTTCTTCGAATTGGGTTTCTTCAGCCCTCCCAATTCCACCGATCGGTTCGTCGGAATTTGGGATAAACGAGTGCCTGTACGAACTGTTTTCTGGGTAGCTAACAGAGACAAGCCTCTCAACGACAAATCAGGGGTTTTCGCCGTATCCAACGACGGGAATCTCGTAGTATTAGATGAACACAATAAAATTCTTTGGAACTCCAATGTTTCTAACGCTGTAGTGAACTCCACCGCTCGTCTTCTTGATTCTGGAAACCTTGTTCTGCAGGACTCTGTTTCAGGGACCGTCATTTGGGAGAGTTTCAAAGACCCATCAGACAAATTCTTGCCAATGATGAAATTCATCACGAACTCAATCACAAACGAGAAAGTAGAAATCGTGTCGTGGAAAACCCCATCTGATCCATCTTCAGGAAATTTCTCCTTTGGAATCGACCCTCTGACGATCCCCGAAGTAATAATTTGGAAAAACAGCCGCCCGTATTGGAGGTCCGGTCCATGGGACGGCCAAGTTTTCATCGGAATACCCGGTATGAACACCGACTATCTTTCTGGAGGTAATCTCGTAATCGAAAACAAAACTTACTCTCTCTCAATTGCCAATGCAAACGAAGCTCAGTTATTCTACTACTACTTGAACCCCAATGGTAGTTTGGAAGAGAATCGTTGGAATATTGAGGATCAAAAATACGAGATAGCTTGGTCAGCTCCTGAAACAGAGTGTGATGTTTATGGTGCTTGTGGAGCATTTGGGGTTTGTGATTCTCAAAGAACCCCAATTTGCAGTTGTTTGAGGGGTTTTAAGCCAGAGAAGGAAGAAGAATGGAACAGAGGAAATTGGAGAAATGGGTGTGTGAGGAATTCACCATTGGAGTGTGAAAAGAAGAACATCAATGTTGAAATAGGAAAACATGAGGATTGGTTTTTGAAAATGGGAATGGTTAAAGTTCCAGATTCTGCAGCTTGGATTTTAGCTTCGGAAAATGAGTGCAGAGTCCAGTGTTTGTCAAACTGTTCTTGTTCTGCATATGCATATAGAACAGGGATTGGTTGTATGATATGGAGAAGAGATTTAATTGACATTCAACAGTTCAAGAATGATGGAGCAGACATTTATGTTCGTGTGGCATATTCAGAAATAGCTGATGAAAGTGGAATCACCAAAGACATGAAATTAGTCATCATAACTTCTGTGGTAACAGGAAGCTTCATACTTATCTGCTGCATATATTGCTTATGGAAAAGGAAAAGGCAGATCAAGTTTTTGATGAACACTGGTGGTGATATGAAGCATGATAAAGTGAATGAAGTTAAGCTTCAGGAGCTGCCTCTTTTTGATTTTGAGAAGCTGGCAATTGCAACTAGCCACTTTCATTTCAATAACAAGATTGGTCAGGGTGGGTTTGGGCCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGACTTTCAAAGACCTCTGGACAAGGGCTTGAAGAGTTTACAAATGAAGTGATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGAGGGAGAAGAAAGAATGTTAGTTTATGAGTACATGCCAAATGGAAGCTTAGATTCAATTATTTTTGATTCAACTAAAGCCAAAGTGTTAGATTGGCGAAAAAGATTTAAGGTCGTTGAAGGAGTTGCTCGAGGACTTCTTTATCTCCATAGAGATTCAAGACTAAAAATCATTCATAGAGATCTAAAAGCCAGTAACATTTTACTAGATCTAGATTTAAATCCCAAAATTTCAGATTTTGGTACTGCTAGAATTGTTTACGGCAATGAAGCTCAAGCTAATACCACGAGAGTTATTGGTACTTATGGCTATATGTCTCCAGAATACGTGTTGAATGGCCAATTTTCAGAGAAGTCAGATGTGTTTAGCTTTGGAGTTTTGTTGCTTGAAATTATTAGTGGAAGAAAAAATACAAGCTTCTATGATAATGAACACGCCTTGAGCCTTCTAGGATTTGCATGGAAATTATGGATGGAGGACAATTCAGTTGCTTTGATTGATCAAACAACGTTTGAATTGTGTTGTGAAGCAGAGATTTTGAGGTACATTCATGTAGGATTATTGTGTGTTCAAGAATTGGCAAAGGATAGACCAAATATGATGACAATTCTTTCGATGTTTCACAATGAGATCACAGTTCTTCCAATACCAAAGCAACCTGGATTTAGTAGTAGGCAAATTGAGATTCATACTCAGGCATTCCAACAAAATCATGTTGGAGCTTGCTCCCCAAACATGATCACGCTTACCTCATTTGATGGTCGATAG 2466 39.74 MKPTTNTIPLILLLLCFVLKFSSSIDTITSTQFLKDPEAVLSNRGFFELGFFSPPNSTDRFVGIWDKRVPVRTVFWVANRDKPLNDKSGVFAVSNDGNLVVLDEHNKILWNSNVSNAVVNSTARLLDSGNLVLQDSVSGTVIWESFKDPSDKFLPMMKFITNSITNEKVEIVSWKTPSDPSSGNFSFGIDPLTIPEVIIWKNSRPYWRSGPWDGQVFIGIPGMNTDYLSGGNLVIENKTYSLSIANANEAQLFYYYLNPNGSLEENRWNIEDQKYEIAWSAPETECDVYGACGAFGVCDSQRTPICSCLRGFKPEKEEEWNRGNWRNGCVRNSPLECEKKNINVEIGKHEDWFLKMGMVKVPDSAAWILASENECRVQCLSNCSCSAYAYRTGIGCMIWRRDLIDIQQFKNDGADIYVRVAYSEIADESGITKDMKLVIITSVVTGSFILICCIYCLWKRKRQIKFLMNTGGDMKHDKVNEVKLQELPLFDFEKLAIATSHFHFNNKIGQGGFGPVYKGKLVDGQEIAVKRLSKTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEGEERMLVYEYMPNGSLDSIIFDSTKAKVLDWRKRFKVVEGVARGLLYLHRDSRLKIIHRDLKASNILLDLDLNPKISDFGTARIVYGNEAQANTTRVIGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLEIISGRKNTSFYDNEHALSLLGFAWKLWMEDNSVALIDQTTFELCCEAEILRYIHVGLLCVQELAKDRPNMMTILSMFHNEITVLPIPKQPGFSSRQIEIHTQAFQQNHVGACSPNMITLTSFDGR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6241906 6244950 - CaPI482276_03g005400.1 Cam03g0540 122806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0540 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Cam03g0540 821 Pfam Protein tyrosine and serine/threonine kinase 503 716 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0540 821 Gene3D Phosphorylase Kinase; domain 1 475 577 - -
Cam03g0540 821 CDD B_lectin 31 149 IPR001480 -
Cam03g0540 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 474 577 - -
Cam03g0540 821 SUPERFAMILY Protein kinase-like (PK-like) 487 799 IPR011009 -
Cam03g0540 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Cam03g0540 821 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Cam03g0540 821 SMART blect_4 31 149 IPR001480 -
Cam03g0540 821 Gene3D - 21 146 IPR036426 -
Cam03g0540 821 SMART serkin_6 502 749 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0540 821 CDD STKc_IRAK 508 773 - -
Cam03g0540 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 788 - -
Cam03g0540 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0540 821 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Cam03g0540 821 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cam03g0540 821 CDD PAN_AP_plant 334 421 - -
Cam03g0540 821 PIRSF SRK 2 821 IPR024171 GO:0004674(InterPro)
Cam03g0540 821 SMART ntp_6 348 420 IPR003609 -
Cam03g0540 821 Pfam PAN-like domain 348 406 IPR003609 -
Cam03g0540 821 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Cam03g0540 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Cam03g0540 821 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544(InterPro)
Cam03g0540 821 ProSiteProfiles Protein kinase domain profile. 502 777 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1175 Cam-Chr2:23257805 Cam03g0540 Cam-Chr3:6241906 1.10E-146 dispersed
Cam03g0540 Cam-Chr3:6241906 Cam03g0542 Cam-Chr3:6274398 1.30E-280 dispersed
Cam07g1300 Cam-Chr7:27360615 Cam03g0540 Cam-Chr3:6241906 8.20E-65 dispersed
Cam03g0540 Cam-Chr3:6241906 Cam03g0541 Cam-Chr3:6249612 2.40E-274 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85044 PF07714 PK_Tyr_Ser-Thr 1.20E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0540 - - - 0.0