Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0541 ATGAAACCCCGAAAAAGGACTAACTTCTTTCATCTTCATCTTCATCTTTTGCTTTTCTGCTTCGGTTTAAGATTCTGCATCGCTAGAAATATCATCACATCAACGAACTTCATCACAGACCCTTCAACTCTGTTATCTGAAAGCAGTTTCTTCGAGTTGGGATTTTTTAGCCCTGTTAATACAACGAGCCGATATGTCGGAATATGGCTCAATCAAGGTTCTAAGCTCACTGTCGTATGGGTAGCTAACAGAGACAACCCTCTAAACCATACTTCTGGGGTTTTCACTATTTCCAAGGATGGAAATCTCGTTGTATTAGACGGAAAGAGTAACATTCTTTGGACTTCAAACATTCTAAGCCCTACGATTAACTCGACTGCTCTGCTTTTAGATTCTGGTAATCTTATTTTACAAGACTCTGTTTCTGGGATGATTCTATGGGAGAGTTTCAAACATCCCTCTGATACATTCTTTCCAGCCATGAAAATTTTCACAAACACAAAAACTAAAGAGAAAATAGGGTTGACATCGTGGCAAGGCCCTTCTAATCCATCGAAAGGGCGTTTCTTCTTCGGCATCGATGTTCTGAATAACATTGCTGAAGCTTACATTTGGGAAGGCAGTGATCTGCGTTGGAGATCTGGTCCATGGAATGGCCAATCTTTCATTGGCATACCCCAGATGGATTCTGTTTATTATCTCCTTGGTTTCAGTCTCCTAATTGAAAACCAAACTTACTATCTCTCTGGTCCAAATAGAAATGAGCTGCTCAATTATGAGTTTTATCAGTTAACCTCACAGGGGAATTTTGAGCAATCGCATTGGGATGATACATTGAAGGACTGGAAACCCAGATGGTCAGCTCTAAAAACTCCGTGTGATTTCTATGGAACTTGTGGGGCGTTTGGAATCTGTGATCCAAAATCATTCCCTGTTTGCAGTTGTTTAAAAGGGTTTCAGCCAAAGAATGAGGAGGAATGGAATCAAGGAAATTGGGGAAGTGGGTGTTTGAGAAAGACATCATTGAAGTGTGAGAAAGTGAAAAACGTGAGTGTGGAACATGGCAAGGAAGATGGATTTTTGAAAGTGGGAACAGTTAATTTACCAAATTTTGCAGAGTCGTTGAATTCCTCTGTTTCAGCAGAGGATTGCGGGGTTAAGTGCTCGGATGATTGTTCATGTTCTGCTTATGCTTATGAAAGTGGCATTGGCTGCATGCTATGGAGTGGGGATTTGATCGACGCTCGAAAGCTCGATTTTGGTGGAGCTACTTTTTACCTTAGATCGACATATTCGGAATTAGAGAATGCTACAAAAAGGTCGAAAGTGATCGTAATAGCTTCAGTGATAGCTGGAAGTGGATCACTAATCATCATCTTCATCATATTCGTCTCATGGAGAAGGATAATTGGCCAAAAAGCAAAGGAAGAGATCAGAAAAGGCAAGAAGACGATATTGTTAAAGGAGAGGAGGAAATTTTTGAACTTGGTGATGGATCACAGAATGGGAATCAGTATGAATCAAGAATTACCAACTTATGACTTTGAGAAGCTGGCAATTGCAACAAACAATTTTCATTTAGATAACAAGCTTGGAAAGGGAGGATTTGGGCCAGTGTATAAGGGAAGATTGTTAGATGGACAAGAAATAGCAATAAAAAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGATTGTGATTTCTAAACTACAGCATAGAAATCTTGTTCAGCTTCTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGCTAATATATGAGTATATGCCCAACCTAAGTCTGGATGCATTCATTTTTGACTCTACCAAACAAAAACTCTTAGATTGGAGAAAAAGATTTAACATCATAGATGGAATTGCTCGAGGTCTCCTTTACCTTCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTATTAGACAAAGATATGAACCCTAAAATTTCAGACTTTGGTATGGCAAGAATTTTTGGCAGTAATGAAGTGGAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCTGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTATTACTTGAAATTGTAAGTGGGAGAAGAAACACAAGATTCAACCGCCATGAACACGCTTTAAGCTTATTGGAATTTGCATGGAAGTTGTGGATAGAAGACAATCTTATTACTTTGATCGATCCCACAATGTATGAATTGTGTTATCAATCAGAGATTTTTCGGTGCATCCAAGTAGGACTCTTATGTGTTGAAGAATCTATAAATGATAGACCAAATGTTCTTACCATTATTTCAATGCTCAACACTGAAATTTTGAATATTCCTTTTCCAAAGCAACCTAGCTTTATTGGTAGACCAACTCAGAGTAATGTAAGGATGTCTCGACAATATCAAAATAAATATACTATAAATAGTCTTACGCTTACCTCAGTTAGAGGTCGATAA 2532 38.03 MKPRKRTNFFHLHLHLLLFCFGLRFCIARNIITSTNFITDPSTLLSESSFFELGFFSPVNTTSRYVGIWLNQGSKLTVVWVANRDNPLNHTSGVFTISKDGNLVVLDGKSNILWTSNILSPTINSTALLLDSGNLILQDSVSGMILWESFKHPSDTFFPAMKIFTNTKTKEKIGLTSWQGPSNPSKGRFFFGIDVLNNIAEAYIWEGSDLRWRSGPWNGQSFIGIPQMDSVYYLLGFSLLIENQTYYLSGPNRNELLNYEFYQLTSQGNFEQSHWDDTLKDWKPRWSALKTPCDFYGTCGAFGICDPKSFPVCSCLKGFQPKNEEEWNQGNWGSGCLRKTSLKCEKVKNVSVEHGKEDGFLKVGTVNLPNFAESLNSSVSAEDCGVKCSDDCSCSAYAYESGIGCMLWSGDLIDARKLDFGGATFYLRSTYSELENATKRSKVIVIASVIAGSGSLIIIFIIFVSWRRIIGQKAKEEIRKGKKTILLKERRKFLNLVMDHRMGISMNQELPTYDFEKLAIATNNFHLDNKLGKGGFGPVYKGRLLDGQEIAIKRLSRASKQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSTKQKLLDWRKRFNIIDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIVSGRRNTRFNRHEHALSLLEFAWKLWIEDNLITLIDPTMYELCYQSEIFRCIQVGLLCVEESINDRPNVLTIISMLNTEILNIPFPKQPSFIGRPTQSNVRMSRQYQNKYTINSLTLTSVRGR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6249612 6267734 + CaPI482276_03g005410.1 Cam03g0541 122807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0541 843 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544(InterPro)
Cam03g0541 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Cam03g0541 843 Gene3D Phosphorylase Kinase; domain 1 491 600 - -
Cam03g0541 843 Pfam PAN-like domain 356 414 IPR003609 -
Cam03g0541 843 Pfam D-mannose binding lectin 77 179 IPR001480 -
Cam03g0541 843 Gene3D - 26 151 IPR036426 -
Cam03g0541 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 184 IPR036426 -
Cam03g0541 843 SMART blect_4 35 153 IPR001480 -
Cam03g0541 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 150 - -
Cam03g0541 843 CDD B_lectin 35 153 IPR001480 -
Cam03g0541 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 809 - -
Cam03g0541 843 CDD STKc_IRAK 531 797 - -
Cam03g0541 843 ProSiteProfiles PAN/Apple domain profile. 344 430 IPR003609 -
Cam03g0541 843 Pfam Protein tyrosine and serine/threonine kinase 526 736 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0541 843 PIRSF SRK 3 843 IPR024171 GO:0004674(InterPro)
Cam03g0541 843 SMART ntp_6 355 429 IPR003609 -
Cam03g0541 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0541 843 ProSiteProfiles Protein kinase domain profile. 525 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0541 843 Gene3D Transferase(Phosphotransferase) domain 1 601 802 - -
Cam03g0541 843 SMART serkin_6 525 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0541 843 CDD PAN_AP_plant 355 428 - -
Cam03g0541 843 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 600 - -
Cam03g0541 843 SUPERFAMILY Protein kinase-like (PK-like) 505 796 IPR011009 -
Cam03g0541 843 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2300 Cam-Chr1:35192918 Cam03g0541 Cam-Chr3:6249612 7.70E-207 dispersed
Cam03g0541 Cam-Chr3:6249612 Cam03g0543 Cam-Chr3:6286489 1.80E-293 dispersed
Cam03g0540 Cam-Chr3:6241906 Cam03g0541 Cam-Chr3:6249612 2.40E-274 tandem
Cam03g0541 Cam-Chr3:6249612 Cam03g0542 Cam-Chr3:6274398 5.10E-296 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85045 PF07714 PK_Tyr_Ser-Thr 2.80E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0541 - - - 0.0