Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0542 ATGAGAAAATTAAGACATGCAATTTCTCTTCTCCTCCTTTCATTGACATGCTTCTCTTCAAGATTTTGCTATGGCGACGATACGATTACATCAACAAATTTCATCAAAGACCCTGCAACTATTGTATCCAATGGCAGTGTCTTCAAATTGGGATTCTTCACACCTTTAAATTCTACCCACAGATATGTTGGAATTTGGTTTGACAAAATTTCTCCACAAACCATAGCATGGGTTGCAAACAGAGACAGCCCTCTGAATGATACTTCTGGGATTTTCACTATTTCCAAGGATGGGAATCTTGTGGTCTTAGATTCAAACAACACCATCCTTTGGTCTTCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCAACCAACAACACAATCGCTCAAATTCTAGATTCTGGAAACTTGGTTTTGAAAGATACTACTTCCGGGGTTATTGTATGGGAGAGTTTCAAACACCCTTCTGATAAATTCTTGAATTCCATGAAGCTTATGACAAACACAAGAACAAATGAGCACGTGGACTTTATCTCATGGAGCTCGCCTTCCGATCCATCTACAGGTAACTTTTCATTTCTGCTGGATGTTCACAATATCCCTGAAGTTGTGGTTTTGAATGGTGGTAAAACTTATTGGCGATCTGGTCCATGGAACGGTCAGTCCTTTATTGGAATACCTGAAATGAATTCTGTTTATCTCTCTGGGTATAACCTTGCAATCCAAGATCAAACTTACACCCTCTCTCTTGCTTCCAATCTTGATACTCAACAAATTTTTTATTTGTTCATAAGCTCACAAGGGAACCTTGAGCAAAGTGATTGGGATCCTGAGAAGAAGCAATGGAATGTTAGTTGGGTTGCTGAAAAAACAGAGTGTGATTTCTATGGAACTTGTGGAGCGTTTGGGATTTGTAATGCAAAAGCATCCCCTGTTTGCAGTTGTTTAACAGGGTTTAAGCCAAAGCAGGAAAAGGAATGGAATCAAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGTGAGAATCAGTTGAACAACAACACTGATGCTAAAGAAGATGGGTTTTTAAAATTGGGAATGATCAAAGTTCCATTTCTGGCAGAGTGGTCTACTTCCTCTGTTTCAATAGATGATTGCAAGCGCGAGTGCTTGGGAAATTGTTCCTGTAGTTCTTATGCATTTGAAAATGGCATTTGTATGCAATGGATAAATAACTTAATTGATATACAACAGTTTGAGAGCGCTGGAGCTGATCTTTACCTTCGAATCGCATTCGCAGATTTACCTACAACTACAAATAATGTAAGAGACAAGAAGGGAATTGTTATAGCCATAGCCATAGTGATACCCGCAACGATTGTCATCTTCATCATTGCCATATTATTTCTCTGGAAATGGAAGACTAACAAACAAGAGAAGAAGATAATTATGACGTCTAGCCAAAAAGAAAGGATTTTGAAACAAACAAGGAAAGAGGATAACATGATTGAGGATGAAATCAAACTTGAGGAGCTACCACTTTATGAATTTGAGCAGCTGGCAATTGCAACAGATTACTTTGATTTGAGCAACAAGCTTGGGCAGGGTGGATTTGGTCCAGTGTATAAGGGAAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGAGAGTGATTTCAAAGCTACAACACAGGAATCTTGTAAGACTTTTGGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTATATGCCCAACCTAAGTTTGGATGCATTCATCTTTGGCTCTCCCAAACAACAAATTTTCGACTGGAGAAAAAGATTCAATGTTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGGGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCGGATTTTGGCATGGCAAGAATCTTTGGTGGCGATGAAGTTGAAGCAAACACTTTAAGAGTTGTTGGAACTTATGGATATATGTCTCCTGAATATGCGATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTGTTACTTGAAATTATTAGTGGGAGAAGAAATACAGGATTCTACCTCCATGAAAATTGCATAAGCTTACTGGGATTTGCATGGAAATTGTGGACAGAAGACAATCTTATTCCTTTGATTGAACCAACAATATATGAACCGTGCTACAAATCAAATATTTTGAGATGCATTCATGTGGGACTCTTATGTGTTCAAGAATTTATTAATGAGAGACCAAATATTTCCACCATCATTTCAATGCTTAATAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAACCTGGCTTTGTGGGCAGACCACATGAAAGTAACACAGAATCTTCTCAACAAAATTTAGATCAATATTCTATAAATAATGTTACACTTACAACAGTTATAGCACGCTAA 2541 37.07 MRKLRHAISLLLLSLTCFSSRFCYGDDTITSTNFIKDPATIVSNGSVFKLGFFTPLNSTHRYVGIWFDKISPQTIAWVANRDSPLNDTSGIFTISKDGNLVVLDSNNTILWSSNVSSSSSSSSSSSATNNTIAQILDSGNLVLKDTTSGVIVWESFKHPSDKFLNSMKLMTNTRTNEHVDFISWSSPSDPSTGNFSFLLDVHNIPEVVVLNGGKTYWRSGPWNGQSFIGIPEMNSVYLSGYNLAIQDQTYTLSLASNLDTQQIFYLFISSQGNLEQSDWDPEKKQWNVSWVAEKTECDFYGTCGAFGICNAKASPVCSCLTGFKPKQEKEWNQGNWSNGCVRKTPLKCENQLNNNTDAKEDGFLKLGMIKVPFLAEWSTSSVSIDDCKRECLGNCSCSSYAFENGICMQWINNLIDIQQFESAGADLYLRIAFADLPTTTNNVRDKKGIVIAIAIVIPATIVIFIIAILFLWKWKTNKQEKKIIMTSSQKERILKQTRKEDNMIEDEIKLEELPLYEFEQLAIATDYFDLSNKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSPKQQIFDWRKRFNVIDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDEVEANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHENCISLLGFAWKLWTEDNLIPLIEPTIYEPCYKSNILRCIHVGLLCVQEFINERPNISTIISMLNSEIVDLPSPKQPGFVGRPHESNTESSQQNLDQYSINNVTLTTVIAR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6274398 6277569 + CaPI482276_03g005420.1 Cam03g0542 122808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0542 846 CDD STKc_IRAK 534 800 - -
Cam03g0542 846 SMART blect_4 32 159 IPR001480 -
Cam03g0542 846 CDD B_lectin 32 159 IPR001480 -
Cam03g0542 846 ProSiteProfiles PAN/Apple domain profile. 348 432 IPR003609 -
Cam03g0542 846 SUPERFAMILY Protein kinase-like (PK-like) 509 799 IPR011009 -
Cam03g0542 846 ProSiteProfiles Bulb-type lectin domain profile. 26 156 IPR001480 -
Cam03g0542 846 SMART ntp_6 358 431 IPR003609 -
Cam03g0542 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Cam03g0542 846 SMART serkin_6 528 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0542 846 Gene3D - 23 157 IPR036426 -
Cam03g0542 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0542 846 Pfam Domain of unknown function (DUF3403) 801 846 IPR021820 GO:0004674(InterPro)
Cam03g0542 846 PIRSF SRK 1 846 IPR024171 GO:0004674(InterPro)
Cam03g0542 846 Gene3D Phosphorylase Kinase; domain 1 485 603 - -
Cam03g0542 846 Pfam Protein tyrosine and serine/threonine kinase 530 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0542 846 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 603 - -
Cam03g0542 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 156 - -
Cam03g0542 846 Pfam PAN-like domain 359 417 IPR003609 -
Cam03g0542 846 CDD PAN_AP_plant 344 432 - -
Cam03g0542 846 Pfam D-mannose binding lectin 74 184 IPR001480 -
Cam03g0542 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 813 - -
Cam03g0542 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 224 IPR036426 -
Cam03g0542 846 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Cam03g0542 846 ProSiteProfiles Protein kinase domain profile. 528 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0542 846 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0162 Cam-Chr2:2645804 Cam03g0542 Cam-Chr3:6274398 2.10E-166 dispersed
Cam03g0540 Cam-Chr3:6241906 Cam03g0542 Cam-Chr3:6274398 1.30E-280 dispersed
Cam03g0542 Cam-Chr3:6274398 Cam05g1677 Cam-Chr5:24956488 3.90E-179 dispersed
Cam03g0541 Cam-Chr3:6249612 Cam03g0542 Cam-Chr3:6274398 5.10E-296 tandem
Cam03g0542 Cam-Chr3:6274398 Cam03g0543 Cam-Chr3:6286489 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85046 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0542 - - - 0.0