Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g0686 | ATGGATAATCCCAGGAATATCCCTGCCAACAACCCTTCCAGCAACACGGGACAATGTTTCAATCCTGCATTTGTTCATGCAATAGCAGTTCCTGAAGTTAATATGCTGGACAAAACAGGCCAGATATGTGTCGTTGCAAGGGGGGATGGTATTGTTCATGTGATTGATATTGAATCTGAGAAATTGAAGATTTCCTCAAAAACTGGTAAAAGAACACAAACAAGATCTAAGGGAGTTTCAGCGGCTTGTGATATGGATAACCAAACGCAAACTGGAAGAAAGAGGTTATATTTGGATTATACTGTTGGTGGACATTCTGCTGCCGTGTCCTGTGTGGCGTTTTCTCAATTTGGAGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAGATGCATAAAGCTTTGGAATTGGTGTGGAGTTCCTGATGCTGGGGAAACTAGCAGCAGCAACAACGATATTCTTCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTTTGTACTACTCCATCTGAATCAGAAAACCTTATCGTTTGTGATACCAGCAAAGTAGTGAAGATCCTTAAGAATAACAATTTTGAGTCTAAGAGTAGGCATTTGCTGAGAATCACCACGAAATATTACCTTCCTGACAAGGTGCAGCATCCTCCTATCTCCAGGAATCAACATTTCACCTTCATCCAAGCAAAAATTGATCGAAAGAAGAAGATTCAAACTCCAGTGAGAAGCGCACTTCAATTTGAAGATTCACAGACTCTGGAGTTGCTTGCATTTGTGTGGGGTTGCTTTTCCAGTTTCTCCTGTAGCGGTTTGGTTGGTGCACAATCGTCTGTTAGTAGTTCAAATCAAAGACGTGCTCGCCCTAACCAAATCTTTGCTTACACTTCCCGCAAAATTCAAATCTGTTTCTACACACACTTTGCTTCTCATCTCTTCTTCCTCTCCTCTGCAGATGGAATCAGGTGTCCGAAGAAAGGGCAAGTGAGAAACAGGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAACCAGTCGGGGTTGATGGCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAGAGTCTGCGTTCAGTATGATATTAAGGAAGGTCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGAATCTCATCTCAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCCGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTACTGTGAAGACTGAACAGGAAGCTCAAATACCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGATTGCAGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCCCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAACTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAGTTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCCTATGAAGAGTTTAAAGTACGTGTCAATGCTTTGGTAGCGAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACGTAGAGGGTAATGAACTTCCTCGACTGGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCAGCAGTCCTCACAAACGCCCCATTCATTCTCAACCTTGACTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATACGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTATGGACCTCCTACTCTGCCTAGCTTATCTAAGACGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGGTCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAATCTAAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCCTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCTAATCCATCGACTTTGATTAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCGTGAGGCCAGCATTCAAAGGATCAGCACCGATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTGTGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTCATTGCCTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACCCTGTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTCGAGCTGCGTTGGAGCGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTGGCTGGCATCGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACGCTGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTCATTGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATCAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA | 3954 | 43.63 | MDNPRNIPANNPSSNTGQCFNPAFVHAIAVPEVNMLDKTGQICVVARGDGIVHVIDIESEKLKISSKTGKRTQTRSKGVSAACDMDNQTQTGRKRLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDRCIKLWNWCGVPDAGETSSSNNDILHLNINLSKKVNWLCTTPSESENLIVCDTSKVVKILKNNNFESKSRHLLRITTKYYLPDKVQHPPISRNQHFTFIQAKIDRKKKIQTPVRSALQFEDSQTLELLAFVWGCFSSFSCSGLVGAQSSVSSSNQRRARPNQIFAYTSRKIQICFYTHFASHLFFLSSADGIRCPKKGQVRNRMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMESHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAQIPPQQQMEEKQISEEIAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTTSSSSCSWCGCCSCCCPSKKVSKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC | 1317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7757440 | 7769153 | - | CaPI482276_03g006860.1 | Cam03g0686 | 122952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g0686 | 1317 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 102 | 137 | IPR001680 | GO:0005515(InterPro) | |
Cam03g0686 | 1317 | SUPERFAMILY | WD40 repeat-like | 37 | 198 | IPR036322 | GO:0005515(InterPro) | |
Cam03g0686 | 1317 | Pfam | WD domain, G-beta repeat | 100 | 137 | IPR001680 | GO:0005515(InterPro) | |
Cam03g0686 | 1317 | Pfam | Zinc-binding RING-finger | 340 | 392 | IPR027934 | - | |
Cam03g0686 | 1317 | MobiDBLite | consensus disorder prediction | 450 | 480 | - | - | |
Cam03g0686 | 1317 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 602 | 1115 | IPR029044 | - | |
Cam03g0686 | 1317 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 102 | 137 | - | - | |
Cam03g0686 | 1317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 326 | 415 | IPR013083 | - | |
Cam03g0686 | 1317 | SMART | WD40_4 | 95 | 137 | IPR001680 | GO:0005515(InterPro) | |
Cam03g0686 | 1317 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 508 | 1284 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cam03g0686 | 1317 | FunFam | Cellulose synthase | 705 | 879 | - | - | |
Cam03g0686 | 1317 | Pfam | Cellulose synthase | 588 | 1307 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cam03g0686 | 1317 | Gene3D | - | 10 | 242 | IPR015943 | GO:0005515(InterPro) | |
Cam03g0686 | 1317 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 738 | 880 | IPR029044 | - | |
Cam03g0686 | 1317 | SUPERFAMILY | RING/U-box | 330 | 408 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0686 | Cam-Chr3:7757440 | Cam06g0079 | Cam-Chr6:2660182 | 0.00E+00 | dispersed | |
Cam03g0686 | Cam-Chr3:7757440 | Cam02g0928 | Cam-Chr2:13097730 | 1.30E-112 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g0686 | K10999 | - | csv:101208988 | 1958.73 |