Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0697 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTAGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATTTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTTGTTCCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACCGTCCCGAGGGACTTCTGCTGCCCCATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGTTCGATTACTAGATGGATGGAAGAAGGCCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTAAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATACAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCGTTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGTGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTATAA 2148 46.6 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRIFVDERDEALRTRFLLFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYTMASPTRAALEANRATAMILIQQLSVGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7873622 7875769 + CaPI482276_03g006970.1 Cam03g0697 122963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0697 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cam03g0697 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0697 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Cam03g0697 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 SMART arm_5 587 627 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Cam03g0697 715 SUPERFAMILY RING/U-box 277 362 - -
Cam03g0697 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0697 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 Gene3D - 392 667 IPR011989 -
Cam03g0697 715 Coils Coil 212 232 - -
Cam03g0697 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam03g0697 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Cam03g0697 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Cam03g0697 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Cam03g0697 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0697 Cam-Chr3:7873622 Cam05g2319 Cam-Chr5:31267579 1.40E-44 dispersed
Cam03g1404 Cam-Chr3:28554537 Cam03g0697 Cam-Chr3:7873622 7.40E-11 transposed
Cam04g0651 Cam-Chr4:20588538 Cam03g0697 Cam-Chr3:7873622 2.10E-106 transposed
Cam11g0631 Cam-Chr11:7846123 Cam03g0697 Cam-Chr3:7873622 1.30E-92 transposed
Cam03g0697 Cam-Chr3:7873622 Cam05g2539 Cam-Chr5:33222124 8.60E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0697 - - - 0.0