Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0713 ATGTTTACAGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATTTGCTGGTGATAGTTGTGGGTCATTTAATGAGGAAGAGCTCTTAGAAGGGATATCAGTGGTAAAAGATTTCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGTCTTCTAGTTGTAGCAAACAGGTTACCTGTGTCTGCTGTTAGGAAAGGGAAGGAGGCATGGCATCTCGAAATCAGCGTGGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCTTAGAGAAGGCATTAGCTGAAAAGAAATGCATACCAGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGGCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCGTCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGATTAGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACCCGCATAGCTGCTTTTCCAATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAATTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGACAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCCCTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACTGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACACAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATCCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCAATTACAACATGTGGTTGGCAGCAGAAAATGGGATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCTGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACTCCTAGATCCCATTTTGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCACCTATGGACTGGTCCAATCTCAAATGCATCGGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAGAACAACAGTTGCCAATCCATTCGGAGGAGTACCGGTGCCAAAGATCTCAAACAATGGAGCCCCACCAAGCAGGTCGGGACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAAAGAAGAGCAAATAGCCATGGAAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGTGCTGTGGGGCGGAAACGATCCAGTGCTAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAATTGTCAGAATGTTCAGAGTCAAGTTTAAGTTAG 2829 43.09 MFTGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEARDAYSLGEVNSYDLFTFAGDSCGSFNEEELLEGISVVKDFFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKEAWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDPLGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAARTTVANPFGGVPVPKISNNGAPPSRSGRLKKQRSLSILERRANSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSSARYLLGSSDDVVTLVKELSECSESSLS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8015379 8022773 + CaPI482276_03g007130.1 Cam03g0713 122979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0713 942 Gene3D Glycogen Phosphorylase B; 349 551 - -
Cam03g0713 942 Coils Coil 26 46 - -
Cam03g0713 942 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 692 772 - -
Cam03g0713 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 97 935 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cam03g0713 942 CDD HAD_TPP 600 820 - -
Cam03g0713 942 FunFam Alpha,alpha-trehalose-phosphate synthase 626 695 - -
Cam03g0713 942 Gene3D Glycogen Phosphorylase B; 94 348 - -
Cam03g0713 942 CDD GT20_TPS 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cam03g0713 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 349 551 - -
Cam03g0713 942 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
Cam03g0713 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 94 348 - -
Cam03g0713 942 Gene3D - 626 815 IPR023214 -
Cam03g0713 942 SUPERFAMILY HAD-like 601 931 IPR036412 -
Cam03g0713 942 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cam03g0713 942 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cam03g0713 942 Pfam Trehalose-phosphatase 625 824 IPR003337 GO:0005992(InterPro)
Cam03g0713 942 Gene3D - 692 772 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0713 Cam-Chr3:8015379 Cam10g0139 Cam-Chr10:3017249 5.30E-124 dispersed
Cam11g1750 Cam-Chr11:30042654 Cam03g0713 Cam-Chr3:8015379 0.00E+00 transposed
Cam03g0713 Cam-Chr3:8015379 Cam07g0257 Cam-Chr7:3666560 8.40E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0713 K16055 - csv:101213690 1756.11