Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0716 ATGGAAGGGCCAAGCCCAAGGCATAAAGATACGCTCAATTCCACAAGTAGTGAAAGGAAAATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAAGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGTCAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTTGACAGACATGCAAAGAACAAATATTCGGAATTTGTGGAAATCGCCATTGCTCATAACAAGCACCTGAATCTCAGATTCTTGTTCTCGGACAAAACCTCCGAAGAGCTATCGACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATCAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAATCATCAAATGGCACCGGAGGGCGGAGACGCCTTCGAGTTGTAAAGACGACGCACATAGATTACTGTATGCATAGAATAAATCTACTTCGGCACTATGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCGTATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTAATTAGACACTTGAAGTACAGCACAGTTTCAGTTCCTCATCTGTATGAAGAATCATTCAAGAAAGCGATATTGACTTTTCAGCATCAACGGGTTTACGACCCTATCACTGAAGAAATCGTACATCTATCCCAAATATCCAGCCATATAGGAGATGACTTGGATTTCTTGGGCCCATATCCTTTTCTTTGGAGCTCATTCCAATTTTCTGAGCAGAATATCAACTCCGGAGTCTCGCATGAAAGACCTTACATATTAAAAGAATTTAACCCTGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTTAGGGATGACACCTCAATTGGTGCCAAGGAGCAAGTAAGAAATGATAATGCAGATGGATTTCCTATTTCTGATTCTTGCAATCAGAGTAAGGATATGGTCAGCAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAGAGGGTCATTGTAAGGAGTTCTTACTTCACGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGATGAAACAGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTTAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACGATGA 2850 42.42 MEGPSPRHKDTLNSTSSERKMVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALKADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNVSIGFIFHEDAKKFDRHAKNKYSEFVEIAIAHNKHLNLRFLFSDKTSEELSTVSSNGDSGAVTATEINYVADPYQGFGGFFCGDRYLFLAPQRRFLLQQRALQCPSHLQSSNGTGGRRRLRVVKTTHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLKYSTVSVPHLYEESFKKAILTFQHQRVYDPITEEIVHLSQISSHIGDDLDFLGPYPFLWSSFQFSEQNINSGVSHERPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKQSANQPSFRDDTSIGAKEQVRNDNADGFPISDSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFTHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHDETVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRR 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8050083 8059756 - CaPI482276_03g007160.1 Cam03g0716 122982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0716 949 MobiDBLite consensus disorder prediction 29 44 - -
Cam03g0716 949 FunFam Eukaryotic translation initiation factor 4E 71 255 - -
Cam03g0716 949 Pfam XPG N-terminal domain 354 401 IPR006085 GO:0004518(InterPro)
Cam03g0716 949 Gene3D - 514 584 - -
Cam03g0716 949 ProSitePatterns Eukaryotic initiation factor 4E signature. 136 159 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cam03g0716 949 Gene3D - 326 513 - -
Cam03g0716 949 MobiDBLite consensus disorder prediction 777 799 - -
Cam03g0716 949 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 376 395 IPR006084 -
Cam03g0716 949 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 461 481 IPR006084 -
Cam03g0716 949 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 440 457 IPR006084 -
Cam03g0716 949 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 519 534 IPR006084 -
Cam03g0716 949 MobiDBLite consensus disorder prediction 777 794 - -
Cam03g0716 949 Pfam Eukaryotic initiation factor 4E 81 231 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cam03g0716 949 ProSitePatterns XPG protein signature 1. 374 388 IPR019974 GO:0016788(InterPro)
Cam03g0716 949 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 340 900 IPR006084 GO:0017108(PANTHER)
Cam03g0716 949 SMART HhH_4 516 549 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cam03g0716 949 Pfam XPG I-region 444 529 IPR006086 GO:0004518(InterPro)
Cam03g0716 949 FunFam exonuclease 1 512 584 - -
Cam03g0716 949 Gene3D RNA Cap, Translation Initiation Factor Eif4e 72 255 IPR023398 -
Cam03g0716 949 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 515 629 IPR036279 -
Cam03g0716 949 MobiDBLite consensus disorder prediction 1 56 - -
Cam03g0716 949 SMART xpgineu 441 511 IPR006086 GO:0004518(InterPro)
Cam03g0716 949 FunFam - 385 510 - -
Cam03g0716 949 SUPERFAMILY PIN domain-like 352 529 IPR029060 -
Cam03g0716 949 CDD H3TH_EXO1 517 588 IPR037315 GO:0003677(InterPro)|GO:0035312(InterPro)
Cam03g0716 949 MobiDBLite consensus disorder prediction 930 949 - -
Cam03g0716 949 MobiDBLite consensus disorder prediction 1 27 - -
Cam03g0716 949 CDD PIN_EXO1 355 505 IPR044752 GO:0046872(InterPro)
Cam03g0716 949 SUPERFAMILY eIF4e-like 76 251 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0716 Cam-Chr3:8050083 Cam04g1103 Cam-Chr4:25172497 2.20E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0716 K10746 - csv:101214177 1032.71