Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g0716 | ATGGAAGGGCCAAGCCCAAGGCATAAAGATACGCTCAATTCCACAAGTAGTGAAAGGAAAATGGTAGTCGAAGAGACGATCAAAGCTACATCCACGGAAGATCTTTCTAATACCATTGCAAATCAAAACCCTAGAGGACGAGGCGGTGATGAAGATGAGGAACTTGAGGAAGGAGAGATCGTCGGAGACGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACCCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCTAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAAGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAGAATGCTTCCAATGAAGCTGCGCAGGCGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTACAATGTCAGCATTGGCTTTATATTCCACGAAGATGCGAAGAAATTTGACAGACATGCAAAGAACAAATATTCGGAATTTGTGGAAATCGCCATTGCTCATAACAAGCACCTGAATCTCAGATTCTTGTTCTCGGACAAAACCTCCGAAGAGCTATCGACCGTGTCGAGCAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATTATGTTGCCGATCCATATCAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGCCCTTCCCACCTCCAATCATCAAATGGCACCGGAGGGCGGAGACGCCTTCGAGTTGTAAAGACGACGCACATAGATTACTGTATGCATAGAATAAATCTACTTCGGCACTATGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTCGCACGTGCAATAGAACATGAGGCGAATGGAAATTCTGCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATAACGCCCTTGATCGCCCATGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCGTATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTCATACCATTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGGTATGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTGCCATCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGACAAGGTAATTAGACACTTGAAGTACAGCACAGTTTCAGTTCCTCATCTGTATGAAGAATCATTCAAGAAAGCGATATTGACTTTTCAGCATCAACGGGTTTACGACCCTATCACTGAAGAAATCGTACATCTATCCCAAATATCCAGCCATATAGGAGATGACTTGGATTTCTTGGGCCCATATCCTTTTCTTTGGAGCTCATTCCAATTTTCTGAGCAGAATATCAACTCCGGAGTCTCGCATGAAAGACCTTACATATTAAAAGAATTTAACCCTGGAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTCACGAAATACTTTTGTTTTGCTTCTCTTGAGGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTTAGGGATGACACCTCAATTGGTGCCAAGGAGCAAGTAAGAAATGATAATGCAGATGGATTTCCTATTTCTGATTCTTGCAATCAGAGTAAGGATATGGTCAGCAATAAGATGGAAGAAGCGAAGCATATTTTACTTCAGCAACACACTCGATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAAACCCGATTGTGAGAAGTTTCCTGATACAACTGGAGAAAAAGTGAGGAAAGAGAACAAGAGGGTCATTGTAAGGAGTTCTTACTTCACGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAGCTTTCTGACCAGAAAAATGCAGATGTTGCTGTGCATGAGATAACCACTCCCGAGGTTGCCTCTTTTATTAGTAGTTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTCCAAATGAAAGCATTCAAATGGACAATGTGAAAACGAAACATTTGTGTAAGGATACATCGCAAGCTGATCATGATGAAACAGTACTGGAGACAAAAAGTGAAGAAGGGAAGTTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTCGAGCCAGCGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACTTTAGCCAATTTTCTTATGTACCAAATAAGCACAGGGACCCCTTGCAATTCCGAAAAGGAAGACGATGA | 2850 | 42.42 | MEGPSPRHKDTLNSTSSERKMVVEETIKATSTEDLSNTIANQNPRGRGGDEDEELEEGEIVGDDDLDSSNLSAAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALKADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNVSIGFIFHEDAKKFDRHAKNKYSEFVEIAIAHNKHLNLRFLFSDKTSEELSTVSSNGDSGAVTATEINYVADPYQGFGGFFCGDRYLFLAPQRRFLLQQRALQCPSHLQSSNGTGGRRRLRVVKTTHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHEANGNSAAAYECYQKAVDITPLIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLKYSTVSVPHLYEESFKKAILTFQHQRVYDPITEEIVHLSQISSHIGDDLDFLGPYPFLWSSFQFSEQNINSGVSHERPYILKEFNPGSVKKKLDLPVQKNVLTKYFCFASLEAKRKFRAPKQSANQPSFRDDTSIGAKEQVRNDNADGFPISDSCNQSKDMVSNKMEEAKHILLQQHTRSIHKPCVTLHKKPDCEKFPDTTGEKVRKENKRVIVRSSYFTHKPESNDEQENNQKLSDQKNADVAVHEITTPEVASFISSSCDGSITKRKASPNESIQMDNVKTKHLCKDTSQADHDETVLETKSEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDFSQFSYVPNKHRDPLQFRKGRR | 949 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8050083 | 8059756 | - | CaPI482276_03g007160.1 | Cam03g0716 | 122982 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
Cam03g0716 | 949 | FunFam | Eukaryotic translation initiation factor 4E | 71 | 255 | - | - | |
Cam03g0716 | 949 | Pfam | XPG N-terminal domain | 354 | 401 | IPR006085 | GO:0004518(InterPro) | |
Cam03g0716 | 949 | Gene3D | - | 514 | 584 | - | - | |
Cam03g0716 | 949 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 136 | 159 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Cam03g0716 | 949 | Gene3D | - | 326 | 513 | - | - | |
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 777 | 799 | - | - | |
Cam03g0716 | 949 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 376 | 395 | IPR006084 | - | |
Cam03g0716 | 949 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 461 | 481 | IPR006084 | - | |
Cam03g0716 | 949 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 440 | 457 | IPR006084 | - | |
Cam03g0716 | 949 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 519 | 534 | IPR006084 | - | |
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 777 | 794 | - | - | |
Cam03g0716 | 949 | Pfam | Eukaryotic initiation factor 4E | 81 | 231 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cam03g0716 | 949 | ProSitePatterns | XPG protein signature 1. | 374 | 388 | IPR019974 | GO:0016788(InterPro) | |
Cam03g0716 | 949 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 340 | 900 | IPR006084 | GO:0017108(PANTHER) | |
Cam03g0716 | 949 | SMART | HhH_4 | 516 | 549 | IPR008918 | GO:0003677(InterPro)|GO:0003824(InterPro) | |
Cam03g0716 | 949 | Pfam | XPG I-region | 444 | 529 | IPR006086 | GO:0004518(InterPro) | |
Cam03g0716 | 949 | FunFam | exonuclease 1 | 512 | 584 | - | - | |
Cam03g0716 | 949 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 72 | 255 | IPR023398 | - | |
Cam03g0716 | 949 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 515 | 629 | IPR036279 | - | |
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Cam03g0716 | 949 | SMART | xpgineu | 441 | 511 | IPR006086 | GO:0004518(InterPro) | |
Cam03g0716 | 949 | FunFam | - | 385 | 510 | - | - | |
Cam03g0716 | 949 | SUPERFAMILY | PIN domain-like | 352 | 529 | IPR029060 | - | |
Cam03g0716 | 949 | CDD | H3TH_EXO1 | 517 | 588 | IPR037315 | GO:0003677(InterPro)|GO:0035312(InterPro) | |
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 930 | 949 | - | - | |
Cam03g0716 | 949 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cam03g0716 | 949 | CDD | PIN_EXO1 | 355 | 505 | IPR044752 | GO:0046872(InterPro) | |
Cam03g0716 | 949 | SUPERFAMILY | eIF4e-like | 76 | 251 | IPR023398 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g0716 | Cam-Chr3:8050083 | Cam04g1103 | Cam-Chr4:25172497 | 2.20E-61 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g0716 | K10746 | - | csv:101214177 | 1032.71 |