Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0790 ATGGACGGCAGCGCTGGGAGGTCGAAGGCGTTGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACCAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAATTCCGAGACCGGCGAGAACGTAGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAGTATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGAATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGACGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTAATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCTTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATTTTCAATGAAACAGGGGATTCGGGTAGTCTCGTTGTGGAAAGAAAAGAGGAAGGATCTAAAGCCCCTCTTGCAATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAGCGGGAAACCAGGTTCACATCCAATCGACCTGCCAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTCGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCCGGACGAAGGAGATAGTGGTGCAAGTGTCTCGCAGTCGAGTGGTTTTGAGTTAGAGGGAGGTGCCTTTTTGCTCGGTTTTGACGAGGATTCACTTGGACAATGGTCGAAAAGGTGTTGTACTGCTTTGGATGCAGAAAAAAGAATTGGGCTGCTGTCTTGGCAAGTTTGTTTTGATAACTGGGAGTTAGAGTTTTGGTCTCCTATATCTAAGGACACCTGTGCCCGCCACAAGGCTCGGACCCTTGATGCCTTAATCCTGTACCGAGTTTTGGAGCTCGATGGTGCGAATGTGGGTTGCTTCTTGGAAGTCTATGATATGCAATTTGCTCTTAGGAATATGCATGACCCTGATGTGCTTCTTTTAGTGTTGGTGCATATTGGCCAATTTGCATCAAAGAAAGCCTAA 1758 43.23 MDGSAGRSKALSSSNGGRTRVGKYQLGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTKVYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDPDEGDSGASVSQSSGFELEGGAFLLGFDEDSLGQWSKRCCTALDAEKRIGLLSWQVCFDNWELEFWSPISKDTCARHKARTLDALILYRVLELDGANVGCFLEVYDMQFALRNMHDPDVLLLVLVHIGQFASKKA 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8904221 8913780 + CaPI482276_03g007900.1 Cam03g0790 123056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0790 585 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0790 585 CDD STKc_SnRK3 23 278 - -
Cam03g0790 585 CDD CIPK_C 327 442 - -
Cam03g0790 585 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Cam03g0790 585 Gene3D Kinase associated domain 1, KA1 320 446 - -
Cam03g0790 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g0790 585 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Cam03g0790 585 MobiDBLite consensus disorder prediction 1 23 - -
Cam03g0790 585 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cam03g0790 585 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Cam03g0790 585 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0790 585 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam03g0790 585 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Cam03g0790 585 FunFam Non-specific serine/threonine protein kinase 17 321 - -
Cam03g0790 585 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Cam03g0790 585 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g0790 585 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Cam03g0790 585 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2480 Cam-Chr2:37254928 Cam03g0790 Cam-Chr3:8904221 2.20E-69 dispersed
Cam03g0790 Cam-Chr3:8904221 Cam05g0059 Cam-Chr5:1051400 2.00E-174 dispersed
Cam01g2540 Cam-Chr1:37003094 Cam03g0790 Cam-Chr3:8904221 1.70E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85060 PF00069 Pkinase 1.50E-74 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0790 - - - 0.0