Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0796 ATGAGGCTCTCTGCAGGTGGTTTTAGTCCTCAGGCTCAGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCGAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAATCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGAACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACACGATAATGAGTGGAAATTTAGACACATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAATCAATTACTCCTCGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCTCTGACCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACCGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCCCATTGGCGCTCGGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAACGGCAGCCAAGAGTTTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGTTTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAGTCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCCGTTCTGCAATTCCAGCAGCCCCAAGGTCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAACAATCGTTCAATAATCAACAACAGCAGCATCAACAGCAACCAAGGCAGGCACAGCCACTCGATCATCCGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCTCAGTCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAGGTTTTTCTGATTCCAACGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCGGCCCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTGTACTGGAGCTGCTCAATATTTTTTACCTCAAGTGGAAATTTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCTTTCCCCGGAAGGGAGTGTCCTATTGATGACCGAGATGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAATCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGTGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGACGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTCGGCGATGGCCCATGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATTTCAGGGATAACCTCTGTCGGGGCTCTTGACTACTGA 2709 47.36 MRLSAGGFSPQAQEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQTQSHHLQPQLQPQQSFNNQQQQHQQQPRQAQPLDHPQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPGFSDSNGNPVTSPTVSPLHSLAGSFVQDDSAQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGAAQYFLPQVEILGTPQSSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGALDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9050713 9056102 - CaPI482276_03g007960.1 Cam03g0796 123062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0796 902 ProSiteProfiles PB1 domain profile. 769 853 IPR053793 -
Cam03g0796 902 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam03g0796 902 Gene3D - 291 363 - -
Cam03g0796 902 FunFam Auxin response factor 291 363 - -
Cam03g0796 902 MobiDBLite consensus disorder prediction 483 544 - -
Cam03g0796 902 MobiDBLite consensus disorder prediction 483 551 - -
Cam03g0796 902 FunFam Auxin response factor 765 858 - -
Cam03g0796 902 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Cam03g0796 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Cam03g0796 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cam03g0796 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
Cam03g0796 902 Pfam AUX/IAA family 763 858 IPR033389 -
Cam03g0796 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cam03g0796 902 Gene3D - 125 228 IPR015300 -
Cam03g0796 902 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cam03g0796 902 Gene3D - 767 858 - -
Cam03g0796 902 FunFam Auxin response factor 125 229 - -
Cam03g0796 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 860 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0841 Cam-Chr1:9484489 Cam03g0796 Cam-Chr3:9050713 7.70E-162 dispersed
Cam01g0843 Cam-Chr1:9502344 Cam03g0796 Cam-Chr3:9050713 1.20E-89 dispersed
Cam03g0796 Cam-Chr3:9050713 Cam11g0143 Cam-Chr11:3109179 1.10E-168 dispersed
Cam05g2024 Cam-Chr5:28967162 Cam03g0796 Cam-Chr3:9050713 2.80E-173 transposed
Cam01g2547 Cam-Chr1:37060138 Cam03g0796 Cam-Chr3:9050713 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51667 PF02309 AUX_IAA 3.20E-07 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0796 K14486 - csv:101211705 1661.74