Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0818 ATGGCTCTTGTCGTGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGACGCAAGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAAGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTATCCAAGGCAACAGGAACTGCCGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTTAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAAGGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTGCGCTATGTTCGACAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGAGGCCGCCAACCGGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGCTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAATAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCGCAATATAACACTTCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTACTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTCGATGCGTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGATCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCCGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGAACTGTTGTGGGATCAGTTCAAAGGGTTGCCATGGCTATTGCCCCCTCGCAGCTTGGCCCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATTGCACGAAGCTATAGGATCCACTCAGGGACAGAGCTCTTTCAAGTTGAATCCCTATCTGATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTGGAAACTACCCTAGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTCGATGATGCTGGGCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGGCTGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTGTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTTCTGAAAGTACTGTGGAGAGCAACCAACGAATAAAATCTCCTTGTGCTTCACGACCACATAGTAAGAACAAAGAATTAGTAGGAGTCGAAACTGCAATGGTTGAGAAGTTGCATCCTTCTGAACAGGAACTTGCCAATTCATGTATCTTTTTGGACAATGAAATTGGAGATAGAATCTGCATTAGCATTATCAACAGGATTCCTTTTCTTTTCCTCTGTGTTTAG 2739 46.08 MALVVHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLRSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGIEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARSGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGPQIGPKSLPGSPEALTLAQWIARSYRIHSGTELFQVESLSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRLVSYEQAIAWKVVNDDDVHHCLAFMFSESTVESNQRIKSPCASRPHSKNKELVGVETAMVEKLHPSEQELANSCIFLDNEIGDRICISIINRIPFLFLCV 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9533496 9546057 + CaPI482276_03g008180.1 Cam03g0818 123084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0818 912 MobiDBLite consensus disorder prediction 126 156 - -
Cam03g0818 912 Pfam MEKHLA domain 699 840 IPR013978 -
Cam03g0818 912 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cam03g0818 912 Gene3D - 10 84 - -
Cam03g0818 912 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 840 IPR044830 GO:0003700(InterPro)
Cam03g0818 912 Coils Coil 87 107 - -
Cam03g0818 912 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Cam03g0818 912 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cam03g0818 912 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cam03g0818 912 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Cam03g0818 912 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cam03g0818 912 SUPERFAMILY Bet v1-like 166 376 - -
Cam03g0818 912 Gene3D - 186 377 IPR023393 -
Cam03g0818 912 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Cam03g0818 912 CDD bZIP 70 109 - -
Cam03g0818 912 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Cam03g0818 912 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2188 Cam-Chr2:34611773 Cam03g0818 Cam-Chr3:9533496 0.00E+00 dispersed
Cam03g0818 Cam-Chr3:9533496 Cam09g0011 Cam-Chr9:1057928 0.00E+00 dispersed
Cam01g2569 Cam-Chr1:37337987 Cam03g0818 Cam-Chr3:9533496 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51668 PF01852 START 7.40E-50 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0818 K09338 - csv:101211318 1598.18