Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0819 ATGAGCAATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTCTTGTCGATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTATATCCAATAACTCAAAGAATTCTGAGGAGCCAAGCTTGTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTTAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCGAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAAGGGTGATAAAGAGCGACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTTGATCACGACGTAATTTCAGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTTCAGCCGATGATAACATCTGCGCTGGCATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGGAAATGGTTGAAGTCAGATGACAATGCCCTCATCGACGACAGTGCTGTCGTCATCGTTGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTTCAAAATGTAGAATCAGAGGAGGGGGGAGATAATGTCGTCACCCTTGGAATCGGAGAATGCTCCGGAGTCGTCGAACCAGTCCCACCTCCGACCTCCGACGGTCAACCGAACACGGAAGAAGAAGATGAAGAAATTGATGATGAAGATTCCATGGGAAGAGGTTTCGAAGACATTAGTTTCAACAAGGGTTATAAATTTTAA 1140 42.28 MSNFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEERSKFIRSKYELQEFLKPSLRIISNNSKNSEEPSLFQEISDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTRVIKSDLNPVWNEELMLSVPQEYGPLKLQVFDHDVISANDLMGEAEIDLQPMITSALAFGDAEMFENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESEEGGDNVVTLGIGECSGVVEPVPPPTSDGQPNTEEEDEEIDDEDSMGRGFEDISFNKGYKF 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9546262 9550923 + CaPI482276_03g008190.1 Cam03g0819 123085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0819 379 SMART C2_3c 177 272 IPR000008 -
Cam03g0819 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 317 IPR035892 -
Cam03g0819 379 Pfam C2 domain 176 263 IPR000008 -
Cam03g0819 379 Gene3D C2 domain 174 326 IPR035892 -
Cam03g0819 379 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cam03g0819 379 Gene3D Arf GTPase activating protein 4 135 IPR038508 -
Cam03g0819 379 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 174 328 - -
Cam03g0819 379 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 320 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cam03g0819 379 CDD ArfGap 18 124 - -
Cam03g0819 379 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 MobiDBLite consensus disorder prediction 349 364 - -
Cam03g0819 379 CDD C2_ArfGAP 176 318 - -
Cam03g0819 379 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cam03g0819 379 MobiDBLite consensus disorder prediction 335 379 - -
Cam03g0819 379 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Cam03g0819 379 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0819 Cam-Chr3:9546262 Cam05g2872 Cam-Chr5:35714469 3.00E-86 dispersed
Cam07g0688 Cam-Chr7:14535444 Cam03g0819 Cam-Chr3:9546262 3.00E-19 transposed
Cam07g1369 Cam-Chr7:28084650 Cam03g0819 Cam-Chr3:9546262 2.40E-17 transposed
Cam01g2572 Cam-Chr1:37364803 Cam03g0819 Cam-Chr3:9546262 4.90E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0819 K12486 - csv:101211569 562.762