Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0823 ATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGAACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGGTGTTGTGTTTGGTACTAGAAATGCTTCCAACAAAAATGATGACAGTAACAATCAAAATGGTGCTCTTTCAACTTCAATCAAAGCAATTTGTGATGTGACTTTGTATCCTGATACATGTCACAATGCTTTTGGTCCTTTAGCTAACTTGAGCCATCTCGACCCCGGTGAGATATCCAAGCTTTCGGTTCAATTGGCGCTCGATGAATTGTCGCGAGTGGCTAACTACATTTTTTATCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGGAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACTTTGCTTAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGTATCGACGGCCTCGCGGAAGTTGATCCGGCTTTGGCCAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGTCTTGCCATTCTCTCGTTCTTTTCAAAGCTTACAGATTCTTTAAGTCTACGACGATTGATGAGTTATGATAATCGCCAAAGCAAGCGAGATTGGGTGCGGCCGATACTCCGAAAGCTAGCTCAAACCGATATCAGGAAGCAGGCTAACATCGTTGTAGCCGTAGACGGTTCGGGAAAGTACAAAACAATCTCTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATCTATGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTACGAAGAACAAATGGAACGTGGTGATGGTTGGTGATGGAATGAATGCAACCACAGTAACTGGCAGCCTTAATTTCATAGATGGGACACCAACATTTTCAACTGCAACATTTGCTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCGAGCAAACACCAGGCGGTCGCCCTGATGTCGACATCCGACCAATCAATCTTCTACCGTTGCCGTATAGAGGCATACCAAGACAGTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACAGTTGATTTCATCTTCGGAAATTCAGCAGTAGTCCTACAAAACTGTACTATTGCACCCAAGTTGCCTCTTTTAGGCCAAATGAATACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGGTACAAGGTTGTTCAATCCGACCGTTCGAGAACTTGAAAGCTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACGGTCTATATGCAAAATAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACATCCAAAAGAGTGAAATGGAAGGGTGTGAAGAACATTAGCATTAAAACTGCCAAAGAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCAATGCCAACCTTTGA 1704 43.49 MSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVVLVGVVVGVVFGTRNASNKNDDSNNQNGALSTSIKAICDVTLYPDTCHNAFGPLANLSHLDPGEISKLSVQLALDELSRVANYIFYHAITNSTDNKTILALENCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAILSFFSKLTDSLSLRRLMSYDNRQSKRDWVRPILRKLAQTDIRKQANIVVAVDGSGKYKTISAALKAVPDKSKKRIVIYVKKGTYKENVEVTKNKWNVVMVGDGMNATTVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRIEAYQDSLYAHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISVQGCSIRPFENLKATKTYLGRPWKNYSTTVYMQNNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTSKRVKWKGVKNISIKTAKEFTVSSFIDGKDWISKAQVPFNANL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9670339 9672296 + CaPI482276_03g008230.1 Cam03g0823 123089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0823 567 Gene3D - 256 567 IPR012334 -
Cam03g0823 567 FunFam Pectinesterase 255 567 - -
Cam03g0823 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam03g0823 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Cam03g0823 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cam03g0823 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cam03g0823 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cam03g0823 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Cam03g0823 567 FunFam Pectinesterase 66 220 - -
Cam03g0823 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cam03g0823 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Cam03g0823 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam03g0823 567 CDD PMEI-like_3 72 221 - -
Cam03g0823 567 NCBIfam pectinesterase inhibitor domain 63 216 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0823 Cam-Chr3:9670339 Cam05g0734 Cam-Chr5:6389342 1.20E-118 dispersed
Cam03g0823 Cam-Chr3:9670339 Cam07g1131 Cam-Chr7:25788586 1.20E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0823 - - - 0.0