Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0825 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGAATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATTAAACACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTAGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAAGATAGATCTGATCGCGAACTCGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTGCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTATAAAAGAACAACAGAATTTCGCAGATTGTGTGAAATTATCAGAAATCATCTTGCCAACCTCAACAAGTACAGAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACCGAGATCTTCTGGATATCCAATAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAGCTCTTGCAGTGTCTCCCTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGCTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTCAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCGCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAGTATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATACGTTCCGGCTCTTGAGAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTCATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTCGCTGAATCCTTAAATAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAAGGCATCAAAAACAAGTGATATATTGCCTGATTTGGCTGATATTGTTGATAAGGAGCATAAGAGGCTGCTTGCTCGTAAATCCATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTAAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATACGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTACAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGACTCCGAAAAGTTGACGAAACAAACTCTAATGCAATTGGCCCTTACTGAACAATTGAGGGAGAGGCAGGAAATGGAGAAGAAACTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGATGCTGCATTTCAGCAGCGATTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGCTAGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGATGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTGGTCTTCGCCAAGAGGAATTCAGCAGGCGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGCGAAGAGGAGAGGATTAGAATATTGCGCGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCATCTGATGCACCTGCTAGACCTGACTTTCCTCCTGCTTCTCGCCCTCTGGAGTCTGGGACTGCTGCTCCTGCAGCTGCCGCTGCTGCTGCTGCTGCTGCAGCTGCCGCACCATCTCCAGCAAAATACGTCCCAAGGTTTCGACGGTCTGAAGGCTCCACCGCTACTGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGACCTGCATTTGGAAGTTCAAGGTCATCGTGGTCCTCATCCCGAGTTCCTACTCGTGCTAGCACGGACCGCTGA 2925 44.14 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVSFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVMKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIDAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMMESKKIFQERVIGLRQEEFSRRRAEREEQIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSSDAPARPDFPPASRPLESGTAAPAAAAAAAAAAAAAPSPAKYVPRFRRSEGSTATAPPPESDRWGSSRPDNRPSQPDSWRSDDRRPAFGSSRSSWSSSRVPTRASTDR 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9725774 9735765 + CaPI482276_03g008250.1 Cam03g0825 123091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0825 974 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Cam03g0825 974 Coils Coil 603 649 - -
Cam03g0825 974 Coils Coil 774 794 - -
Cam03g0825 974 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Cam03g0825 974 Coils Coil 93 120 - -
Cam03g0825 974 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cam03g0825 974 MobiDBLite consensus disorder prediction 954 974 - -
Cam03g0825 974 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Cam03g0825 974 Gene3D UVR domain 217 268 - -
Cam03g0825 974 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 965 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cam03g0825 974 Pfam PCI domain 438 509 IPR000717 -
Cam03g0825 974 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Cam03g0825 974 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 949 IPR027512 GO:0005852(InterPro)
Cam03g0825 974 Coils Coil 799 858 - -
Cam03g0825 974 MobiDBLite consensus disorder prediction 814 974 - -
Cam03g0825 974 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Cam03g0825 974 MobiDBLite consensus disorder prediction 814 861 - -
Cam03g0825 974 Coils Coil 561 600 - -
Cam03g0825 974 Coils Coil 669 699 - -
Cam03g0825 974 Gene3D - 363 494 - -
Cam03g0825 974 Gene3D - 269 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0825 Cam-Chr3:9725774 Cam03g1768 Cam-Chr3:32753353 0.00E+00 dispersed
Cam03g0825 Cam-Chr3:9725774 Cam03g0827 Cam-Chr3:9757233 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0825 K03254 - csv:101209344 1561.2