Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0875 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGCTGTGGCCGCAGGGTTGTCAAAGGAGAGCGTTCTTCAATGTCGAGTGGGAAAGTGAAGATGTGGCAGGAGGAGGAGAAGAAAGACGGCGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTCAAGCCTCGGAGATGGCGGATGTGGCTTTGAAGCTTGAACAGCTTGAGATGATGATGGGAGCTGCTCAGGAAGATGGAATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCCGCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAACCCTCCCCCTCAATCTTCTCCGTATTCCAATTCTCACCACAGGATTCAATCCACCACATCGTGTTTATACGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCAGTTTTGCCTCCTAAAGATTCCTCCACACAAACTGAAACTAATTCGCGTAAGCGATTGAAGATTGAAGGAGATATCGGTTCGGTGAATTTGTTACCGTCGCCGTCGCCGTCGTCTTCTTCACCGCCGTTTGTTGCTACGGCGGGGATTGTCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACGGAATCTATTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCTATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCAGATAATACGGCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAATTGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTGTGTAGTAGTCTAGCGGATCTCGACCCGGCGGCTCTGGAGATTCGACCGACGGCGGTGGAGGCGGTGGCGGTAAACTCAGTGTTCGATCTGCACCGCTTGTTGGCTCGGCCTGGAGCGATAGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGGTTTTCCTGGACCGGTTTACAGAGGCGCTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTCGTCGACCGGGTTGGAACCGGCAAGTGAAGACGTGTTGCTGTCCGAGGTTTATTTGGGTAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAGCGAACCGAGTTGAGAGGCACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCGGCTGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGTATGCTTTTGGCCCTCTTTGCTGGTGGAGAAGGGTACAGGGTGGAGGAGAATGATGGTTGTTTAATGCTAGGCTGGCACACTAGACCGTTGATTGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1809 51.74 MKRELEDDRSTAGCGRRVVKGERSSMSSGKVKMWQEEEKKDGGGGGGMDELLAVLGYKVQASEMADVALKLEQLEMMMGAAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTTSCLYDDDSEYDLSAIPGVAVLPPKDSSTQTETNSRKRLKIEGDIGSVNLLPSPSPSSSSPPFVATAGIVSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSTGLEPASEDVLLSEVYLGRQICNVVACEGANRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENDGCLMLGWHTRPLIATSAWQLAPDESK 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10834373 10836181 + CaPI482276_03g008750.1 Cam03g0875 123141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0875 602 Pfam GRAS domain family 229 595 IPR005202 -
Cam03g0875 602 Coils Coil 64 84 - -
Cam03g0875 602 ProSiteProfiles GRAS family profile. 220 595 IPR005202 -
Cam03g0875 602 SMART DELLA_2 49 122 - -
Cam03g0875 602 Pfam Transcriptional regulator DELLA protein N terminal 49 116 IPR021914 -
Cam03g0875 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 594 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cam03g0875 602 MobiDBLite consensus disorder prediction 1 16 - -
Cam03g0875 602 Gene3D - 47 112 IPR038088 -
Cam03g0875 602 MobiDBLite consensus disorder prediction 1 46 - -
Cam03g0875 602 FunFam DELLA protein GAI 47 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0644 Cam-Chr1:7032622 Cam03g0875 Cam-Chr3:10834373 5.60E-193 dispersed
Cam03g0875 Cam-Chr3:10834373 Cam05g1310 Cam-Chr5:13608554 2.40E-175 dispersed
Cam03g0875 Cam-Chr3:10834373 Cam01g1990 Cam-Chr1:33163736 4.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51672 PF03514 GRAS 5.80E-135 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0875 K14494 - csv:101213911 1036.17