Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam03g0879 | ATGGCACTTGCAAATTCAGCTCTACAAGAAGTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGCAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAACAACATCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATATTAAAAATGGAGATAATGGGTCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAACTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGTACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA | 888 | 40.09 | MALANSALQEVDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQHQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHIKNGDNGSVYEWLYSEPTTHFSDAIQETEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10942864 | 10945542 | - | CaPI482276_03g008790.1 | Cam03g0879 | 123145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam03g0879 | 295 | SMART | finulus | 204 | 253 | IPR011598 | GO:0046983(InterPro) | |
| Cam03g0879 | 295 | CDD | bHLH_AtIND_like | 199 | 261 | - | - | |
| Cam03g0879 | 295 | Gene3D | - | 191 | 255 | IPR036638 | GO:0046983(InterPro) | |
| Cam03g0879 | 295 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 198 | 247 | IPR011598 | GO:0046983(InterPro) | |
| Cam03g0879 | 295 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 196 | 256 | IPR036638 | GO:0046983(InterPro) | |
| Cam03g0879 | 295 | Pfam | Helix-loop-helix DNA-binding domain | 206 | 248 | IPR011598 | GO:0046983(InterPro) | |
| Cam03g0879 | 295 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 49 | 260 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam03g0879 | 295 | MobiDBLite | consensus disorder prediction | 191 | 210 | - | - | |
| Cam03g0879 | 295 | FunFam | Transcription factor bHLH83 | 196 | 255 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam03g0879 | Cam-Chr3:10942864 | Cam10g1021 | Cam-Chr10:22591753 | 2.10E-18 | dispersed | |
| Cam03g0879 | Cam-Chr3:10942864 | Cam08g2119 | Cam-Chr8:26599842 | 1.60E-18 | transposed | |
| Cam03g0879 | Cam-Chr3:10942864 | Cam05g2254 | Cam-Chr5:30716309 | 1.60E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51673 | PF00010 | HLH | 9.40E-08 | No_clan | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam03g0879 | - | - | - | 0.0 |