Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g0950 ATGGCATCTGCCATGGCCAAACCCAAAATACAGAGAAAGCTCAGCAGACAGAGCCATGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCTGTTGTTAAAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAGCAGCAGCAGCAACAACAACATCATCAATTACCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACTGTAAGAAAATGAGATGTTCAGGTTCACTCTGTAGCAACACCAAGATAACACACAGGCTTGAAGCAGCTGCATCCCCAGAAGTTCACAAGAAAAGGGTTTTGACTTCCAGAAACAATGAATCTTCAAGTTCAAGTAGATCCAGCAAAGCTCCTCCTTTGAATGAACAAACTGGAGTTGTATCAGCCACATGTTCATCATTATCTGCATCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGATTTTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGAATGTGGTGAGATCTTCATGAAACCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTTAAAGTCCAGAACACTCCAAAAACCATCTCGAAATTCGAGGAATACAGGGATTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAATACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCATTGCACAACCCTGGGTTGTTCATTGGGCCTAAATGGCTCTTCAAACCTCTGTAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGGTGGCTGCAGAGGCTACCGGAGGGGAAGCTGGAAAGGGGATTCTAACAACCGCTACCAGTGGAAAGGCTCATGATAGTGCGGGAGTATCATCGGAGTCCGGCAACGGCAACGATAAACGAGCAATGCTGGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGAAGCATGGAAGATTACGACTCATTGGCGGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGGTTTTTAA 1278 44.37 MASAMAKPKIQRKLSRQSHENQKPKPPSWAVVKGIFSCKYLQPQQQQQQQHHQLPRKEKQQEQATEEISKNCKKMRCSGSLCSNTKITHRLEAAASPEVHKKRVLTSRNNESSSSSRSSKAPPLNEQTGVVSATCSSLSASSSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPECGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGEAGKGILTTATSGKAHDSAGVSSESGNGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12868491 12869853 + CaPI482276_03g009500.1 Cam03g0950 123216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g0950 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Cam03g0950 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 422 - -
Cam03g0950 425 Gene3D - 213 423 - -
Cam03g0950 425 MobiDBLite consensus disorder prediction 42 69 - -
Cam03g0950 425 MobiDBLite consensus disorder prediction 93 107 - -
Cam03g0950 425 MobiDBLite consensus disorder prediction 52 69 - -
Cam03g0950 425 ProSitePatterns Zinc finger C2H2 type domain signature. 189 212 IPR013087 -
Cam03g0950 425 MobiDBLite consensus disorder prediction 1 28 - -
Cam03g0950 425 SUPERFAMILY ADP-ribosylation 214 423 - -
Cam03g0950 425 MobiDBLite consensus disorder prediction 93 126 - -
Cam03g0950 425 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2034 Cam-Chr2:33356290 Cam03g0950 Cam-Chr3:12868491 1.20E-52 dispersed
Cam03g0950 Cam-Chr3:12868491 Cam05g2005 Cam-Chr5:28810964 2.80E-85 dispersed
Cam03g0950 Cam-Chr3:12868491 Cam03g0954 Cam-Chr3:12957652 9.20E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51675 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g0950 - - - 0.0