Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1001 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGAGAGTGGATGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGCCCCCTCGACGCCGCACACTACTGGATCCCTACACCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGTACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGCTCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACTCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA 834 46.04 MQQSWKLSCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQPWSIYH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16577451 16578748 - CaPI482276_03g010010.1 Cam03g1001 123267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1001 277 Gene3D Classic Zinc Finger 187 246 - -
Cam03g1001 277 MobiDBLite consensus disorder prediction 33 59 - -
Cam03g1001 277 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cam03g1001 277 FunFam Zinc finger protein WIP2 160 242 - -
Cam03g1001 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cam03g1001 277 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 190 214 - -
Cam03g1001 277 SUPERFAMILY beta-beta-alpha zinc fingers 101 129 IPR036236 -
Cam03g1001 277 Gene3D Classic Zinc Finger 105 128 - -
Cam03g1001 277 SUPERFAMILY beta-beta-alpha zinc fingers 174 211 IPR036236 -
Cam03g1001 277 PANTHER ZINC FINGER PROTEIN WIP2 86 262 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cam03g1001 277 SMART c2h2final6 106 128 IPR013087 -
Cam03g1001 277 SMART c2h2final6 154 186 IPR013087 -
Cam03g1001 277 SMART c2h2final6 191 211 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1001 Cam-Chr3:16577451 Cam10g1689 Cam-Chr10:30892563 9.20E-85 dispersed
Cam03g1001 Cam-Chr3:16577451 Cam02g2408 Cam-Chr2:36548527 2.80E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51679 PF00096 zf-C2H2 0.0089 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1001 - - - 0.0