Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1073 ATGGAGGACTCAACAACCCCAACTTCTTCAACCCCTAAATTTTCAGATGATGGAGTTCTTGTTGATGCCAATGCCGGAAGCTTCGCTGAAAGACGAGCTTCCAAGAGAGGGAGAAATGGTTGTGTTCCTACAAGGGATTCCCCCATTCTTCCATCTCCTTGCCTCACTTTTCCCTCTGGAATCAGCCCAACTGTGTTTCTTGATTCCCCTATTATGCTGCTCAATACACAGGATTTGCCATCTCCAACCACTGGCACTTTTTCCATACATCAAATAAAAAACGAGCAATCATTGTTGAATCCTGTAATGCCTGAAGATGGAATTAGCCACAGCAGTGAGGATCCCTACTTCAGGTTCGCACCTCATGGGGGGCTTTGTAATCTTCAAAGCCTTTTGAGGCTTGAAAATCAGGAAGCTGACATTGATCGCCAAGCCTTTGAATCAGATAAAACACTGATGGATTTTGAATTCCTACCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCAACCGCTGATAATAGTTATTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAACATGGAAAGTTGTCTTTCTTCTATAACTACTAATCAACCATGTATACCTGAAGAATCAACGAAAGGAGATGACATTGAGATGCAGCATCCTTTAGAAGATGAACAGAAAGGGTCTTACATTCCTATGGGAATGTTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGGCAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATTCAAATTGTCAAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCAAATAACAGAAATCATCTATAAGGGTGCTCACAATCATGCAAGACCTGATCCCAATCGTCGAGCCATGCTTGGATCCGTGCCAACTCCAGGTGATACTCCAGAAATTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGGCATGGAGAAACACTCAATATGGGATGAAGGATATCAAACTTATCTCAGATTGTAGTGTTGTTGACGGTCTAGAGAGGACATCCTCTGTATCAGTTGTGACTGAGCTTGCTTATCCATCGTTAAATCCCCAAGGGAAAACTGTTGGTGTTCTTGAATCGGTGGGAACGCCAGAGCTCTCATCCACACTTGCTAGTCATGATGATGATGATGGTGGTGGTGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGCGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTACGTGAACCAAGAGTAGTTGTCCAAATTGAAACTGAAGTTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACTAGTGCAGGCTGTTTAGTAAGGAAACATGTTGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGAAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCGGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCGAACATGGGTTTGTCCAGAAACTCAAACGTCCCAAAGTCTGAAACACAAATTCAAGATCTTGCTGCCCAGTTCTATCCAAAACCGGAATTTAACCATGACTATCAGAGGTCTGGTTGTTTTGACACTTTTACAAATGATATCAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTCCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATACTGGAACAAGTATGTCTGGTTCTTTGGCATCCGTGGTCCCAGACTTTCCGATTTCCTTGCCATTGAACCAGAACCTTTCAGCTGCTGGTTATGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTCCTGGCTGGTCAGCAGCTGAGGGACACAGATAGATTCCTCACACCCAAACAGGAGCATGACGACGATAACATCTGTGCTTCTTTCCAACCAGTTGTTGATAGTTCAAGTGGATCTTCATCGTCATCAGTCTCATCGGTTCTGATGACCATTACAGAACAGACAATTCATGTGATGAAGAATGGCCATGGGAAATCATGTCACTTCTCAGATGGCTATTTTGCTCAACGCTGCCTACCACATAAGGCTATTCTAAAAATGGATGAGGATCTTGATCTAATGAAACAAACTGCCTCTAATTTAACTCTTGCAGTGATTCTTTCTTCTTCAAGTAGTTTAGGGCTTTCACATTCAGATCCACTTCCAAATGTACCCTGCATCACATTGCTCTTCTTATTCCAAAGTCTTTATGTTCTTAAGTAG 2436 42.32 MEDSTTPTSSTPKFSDDGVLVDANAGSFAERRASKRGRNGCVPTRDSPILPSPCLTFPSGISPTVFLDSPIMLLNTQDLPSPTTGTFSIHQIKNEQSLLNPVMPEDGISHSSEDPYFRFAPHGGLCNLQSLLRLENQEADIDRQAFESDKTLMDFEFLPDFPKEASVLKYEIAPTADNSYFDGKIANGNCENMESCLSSITTNQPCIPEESTKGDDIEMQHPLEDEQKGSYIPMGMLRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSLDGQITEIIYKGAHNHARPDPNRRAMLGSVPTPGDTPEIGEGGGNRSKLEAGLAWRNTQYGMKDIKLISDCSVVDGLERTSSVSVVTELAYPSLNPQGKTVGVLESVGTPELSSTLASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEVDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKCVITTYEGKHNHEVPAARNSGQVNSSNGNAQPSASHVQPNMGLSRNSNVPKSETQIQDLAAQFYPKPEFNHDYQRSGCFDTFTNDIKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHTGTSMSGSLASVVPDFPISLPLNQNLSAAGYDFTNGRPIPPFQVFLAGQQLRDTDRFLTPKQEHDDDNICASFQPVVDSSSGSSSSSVSSVLMTITEQTIHVMKNGHGKSCHFSDGYFAQRCLPHKAILKMDEDLDLMKQTASNLTLAVILSSSSSLGLSHSDPLPNVPCITLLFLFQSLYVLK 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19826360 19837861 + CaPI482276_03g010730.1 Cam03g1073 123339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1073 811 MobiDBLite consensus disorder prediction 425 441 - -
Cam03g1073 811 MobiDBLite consensus disorder prediction 393 444 - -
Cam03g1073 811 MobiDBLite consensus disorder prediction 528 560 - -
Cam03g1073 811 ProSiteProfiles WRKY domain profile. 235 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 SUPERFAMILY WRKY DNA-binding domain 459 526 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 FunFam WRKY transcription factor 228 300 - -
Cam03g1073 811 ProSiteProfiles WRKY domain profile. 461 526 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 MobiDBLite consensus disorder prediction 527 560 - -
Cam03g1073 811 SUPERFAMILY WRKY DNA-binding domain 238 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 FunFam WRKY transcription factor 57 452 526 - -
Cam03g1073 811 Gene3D WRKY domain 235 300 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 210 551 IPR044810 GO:0003700(InterPro)
Cam03g1073 811 Pfam WRKY DNA -binding domain 241 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 Pfam WRKY DNA -binding domain 467 524 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 Gene3D WRKY domain 453 519 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 SMART WRKY_cls 240 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam03g1073 811 SMART WRKY_cls 466 525 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1073 K18835 - - csv:101206605 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1073 Cam-Chr3:19826360 Cam10g0374 Cam-Chr10:6010127 6.20E-89 dispersed
Cam03g1073 Cam-Chr3:19826360 Cam10g0431 Cam-Chr10:6658452 3.70E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51681 PF03106 WRKY 1.20E-23 CL0274 Cam TF