Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1077 ATGAAGCTCCAAGTCGCCGACGACGATCTCGACGCCCTTCTTCTTCCTCCTCCTAACTTCTCCATGGTTGAGGACGGCATTTTCCGATCCGGCTTCCCTCAGCCCCTCAATTTCCCCTTCCTCCGCACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGCAAAAAGGAGCCTTTCGTTTCGATTCCAGAGGATGCTATTCTTGAGGCTCTAAAAATCCTGATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGAGGAAAGCATCGAACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGAGTTCGGTGTTCGAGGAGTACCAGCGATTTGCAGGCATGAAATCGAGGGTGACAGATCTACAATTCATCGAGAAATTCGACATTGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTATCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACATCAGTTTAG 603 45.44 MKLQVADDDLDALLLPPPNFSMVEDGIFRSGFPQPLNFPFLRTLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPEDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLSSVFEEYQRFAGMKSRVTDLQFIEKFDIGSLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19925367 19927051 - CaPI482276_03g010770.1 Cam03g1077 123343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1077 200 CDD PFA-DSP_Siw14 19 160 - -
Cam03g1077 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311(InterPro)
Cam03g1077 200 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
Cam03g1077 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 159 IPR029021 -
Cam03g1077 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Cam03g1077 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Cam03g1077 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Cam03g1077 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Cam03g1077 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Cam03g1077 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Cam03g1077 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 191 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cam03g1077 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1077 Cam-Chr3:19925367 Cam09g1098 Cam-Chr9:11462246 6.40E-56 dispersed
Cam03g1077 Cam-Chr3:19925367 Cam02g1872 Cam-Chr2:31755175 2.40E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1077 K18045 - csv:101211082 367.466