Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam03g1082 | ATGACCACGCTCAAGGAGACGCAGTCTTCAAATCTTCGTCGTCCGTTTTTCCTCTCCAAAAATCGTCAGCAACAATGGAGGGACGGATGTTTTGGACGATGTTCCTCTGCGATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCCCTTACACCATCCTTGCGCGAAGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAAGGGGAGTTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGTAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTCGCCTTAAATATTTTAGGCTATCCACTACGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGGTCTCCTATTTATCCAACTGTACAATCACCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCAAGGGCTTCATTTATTCCTAGTCCTCGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAATGATCAGCTAGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTTCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGCTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAGCCAATGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGTCGAAGCAGGATCTGCAAAGCCGAGGCGGTTATCAATCTCTGAGACTCGAGAGATACCATCTGACGATGAAAATATCGACGCCGAGGGCTGA | 1308 | 46.18 | MTTLKETQSSNLRRPFFLSKNRQQQWRDGCFGRCSSAMEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSISETREIPSDDENIDAEG | 435 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 20172643 | 20184827 | + | CaPI482276_03g010820.1 | Cam03g1082 | 123348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam03g1082 | 435 | MobiDBLite | consensus disorder prediction | 409 | 435 | - | - | |
| Cam03g1082 | 435 | MobiDBLite | consensus disorder prediction | 276 | 292 | - | - | |
| Cam03g1082 | 435 | FunFam | CCCH type zinc finger protein | 293 | 378 | - | - | |
| Cam03g1082 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 341 | 369 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 157 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | MobiDBLite | consensus disorder prediction | 276 | 295 | - | - | |
| Cam03g1082 | 435 | Gene3D | - | 284 | 370 | - | - | |
| Cam03g1082 | 435 | Gene3D | - | 173 | 221 | - | - | |
| Cam03g1082 | 435 | SUPERFAMILY | CCCH zinc finger | 344 | 368 | IPR036855 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SMART | c3hfinal6 | 175 | 202 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SMART | c3hfinal6 | 295 | 322 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SMART | c3hfinal6 | 129 | 156 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SMART | c3hfinal6 | 341 | 368 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SMART | c3hfinal6 | 84 | 111 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SUPERFAMILY | CCCH zinc finger | 89 | 112 | IPR036855 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SUPERFAMILY | CCCH zinc finger | 299 | 324 | IPR036855 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 175 | 203 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | Gene3D | - | 84 | 167 | - | - | |
| Cam03g1082 | 435 | FunFam | Zinc finger nuclease 2 | 83 | 160 | - | - | |
| Cam03g1082 | 435 | SUPERFAMILY | CCCH zinc finger | 133 | 158 | IPR036855 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | SUPERFAMILY | CCCH zinc finger | 177 | 203 | IPR036855 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | PANTHER | PROTEIN PHOSPHATASE RELATED | 63 | 369 | IPR050974 | GO:0003729(PANTHER) | |
| Cam03g1082 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 178 | 202 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 85 | 111 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 132 | 156 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 342 | 368 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 296 | 322 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 295 | 323 | IPR000571 | GO:0046872(InterPro) | |
| Cam03g1082 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 84 | 112 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam03g0338 | Cam-Chr3:4584671 | Cam03g1082 | Cam-Chr3:20172643 | 9.00E-24 | dispersed | |
| Cam03g1082 | Cam-Chr3:20172643 | Cam05g0692 | Cam-Chr5:6050852 | 7.80E-22 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51682 | PF00642 | zf-CCCH | 3.00E-10 | CL0537 | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam03g1082 | - | - | - | 0.0 |