Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1240 ATGGATCAGACGGCTCCTAAGTGTGGCAGGGATGTTTCTAATGGTGAATTTCATCTTCTGTTCTCTGTAGGTTGCAAGAAATCTGGGAAGTCCAGAATCATGTTTCTAGCTGTTGGTCAGTTCTTAGTCAACACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAAAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGCGAGGACAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGAACCAGAAGCTGTTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTGCATAGTCAACAAAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTAGTTAGACTTCAAGCTCTTGTCAGGGGTCACGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTAATAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATTATCTGAGGGCAAAAGTAACACTAAATCTCATTTAAAGACTACTGCCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCGAGCCAAAAAACTGCTGCCTCACATTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAGAAGCTCAAGCATAAACATGCACCTGAGAGGCCGTTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCCACTGGTAAAGCAACCATGGCGAAGTCAATCAACGATAAACCGAAGTCAATTTCCAGATCAGTGAGTTGTTGCAATGGTTGGCAAATATCTGAGGGAATAAGGTTGGTGAGTTTCCTAGGGTACCAAGGAGACGACTCGACTCGTCCAACCAACCCAACCCATGCTCAATAG 1521 43.06 MDQTAPKCGRDVSNGEFHLLFSVGCKKSGKSRIMFLAVGQFLVNTVECTMGVSGKWFKALVGSKKSEKSQSSEHDENARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSEPEAVSIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLIKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGLSEGKSNTKSHLKTTAKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKHKHAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSTGKATMAKSINDKPKSISRSVSCCNGWQISEGIRLVSFLGYQGDDSTRPTNPTHAQ 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24925706 24936751 - CaPI482276_03g012400.1 Cam03g1240 123506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1240 506 ProSiteProfiles IQ motif profile. 169 196 - -
Cam03g1240 506 Gene3D - 142 189 - -
Cam03g1240 506 ProSiteProfiles IQ motif profile. 145 173 - -
Cam03g1240 506 Pfam IQ calmodulin-binding motif 147 166 IPR000048 GO:0005515(InterPro)
Cam03g1240 506 SMART iq_5 144 166 IPR000048 GO:0005515(InterPro)
Cam03g1240 506 SMART iq_5 167 188 IPR000048 GO:0005515(InterPro)
Cam03g1240 506 MobiDBLite consensus disorder prediction 329 387 - -
Cam03g1240 506 PANTHER IQ-DOMAIN 5-RELATED 53 434 - -
Cam03g1240 506 MobiDBLite consensus disorder prediction 388 416 - -
Cam03g1240 506 MobiDBLite consensus disorder prediction 329 463 - -
Cam03g1240 506 MobiDBLite consensus disorder prediction 435 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1497 Cam-Chr1:28512445 Cam03g1240 Cam-Chr3:24925706 7.30E-12 dispersed
Cam03g1240 Cam-Chr3:24925706 Cam09g2081 Cam-Chr9:35375784 3.00E-33 dispersed
Cam03g1240 Cam-Chr3:24925706 Cam05g1966 Cam-Chr5:28517486 1.00E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1240 - - - 0.0