Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g1337 | ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGACGCAGTCTACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCGATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCGAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGGCCTCAGAATAG | 810 | 45.93 | MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECGTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 27336637 | 27338904 | - | CaPI482276_03g013370.1 | Cam03g1337 | 123603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 37 | 101 | - | - | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
Cam03g1337 | 269 | PRINTS | CCAAT-binding transcription factor subunit B signature | 174 | 196 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam03g1337 | 269 | PRINTS | CCAAT-binding transcription factor subunit B signature | 205 | 228 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 203 | 269 | - | - | |
Cam03g1337 | 269 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 16 | 259 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cam03g1337 | 269 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 174 | 228 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam03g1337 | 269 | Gene3D | - | 171 | 233 | - | - | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 206 | 225 | - | - | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cam03g1337 | 269 | ProSiteProfiles | NF-YA/HAP2 family profile. | 171 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 250 | 269 | - | - | |
Cam03g1337 | 269 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 176 | 196 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cam03g1337 | 269 | SMART | cbf3 | 170 | 231 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 226 | 249 | - | - | |
Cam03g1337 | 269 | MobiDBLite | consensus disorder prediction | 39 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2570 | Cam-Chr1:37351303 | Cam03g1337 | Cam-Chr3:27336637 | 6.00E-22 | dispersed | |
Cam03g1337 | Cam-Chr3:27336637 | Cam09g0407 | Cam-Chr9:4416948 | 7.90E-25 | dispersed | |
Cam11g0167 | Cam-Chr11:3258625 | Cam03g1337 | Cam-Chr3:27336637 | 2.00E-24 | transposed | |
Cam02g2393 | Cam-Chr2:36411603 | Cam03g1337 | Cam-Chr3:27336637 | 9.40E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51687 | PF02045 | CBFB_NFYA | 1.70E-25 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g1337 | K08064 | - | csv:101212860 | 500.36 |