Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1337 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGACGCAGTCTACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCGATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCGAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACGAACAAGGCCTCAGAATAG 810 45.93 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECGTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27336637 27338904 - CaPI482276_03g013370.1 Cam03g1337 123603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1337 269 MobiDBLite consensus disorder prediction 37 101 - -
Cam03g1337 269 MobiDBLite consensus disorder prediction 82 101 - -
Cam03g1337 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1337 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1337 269 MobiDBLite consensus disorder prediction 203 269 - -
Cam03g1337 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam03g1337 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1337 269 Gene3D - 171 233 - -
Cam03g1337 269 MobiDBLite consensus disorder prediction 206 225 - -
Cam03g1337 269 MobiDBLite consensus disorder prediction 1 17 - -
Cam03g1337 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1337 269 MobiDBLite consensus disorder prediction 1 22 - -
Cam03g1337 269 MobiDBLite consensus disorder prediction 250 269 - -
Cam03g1337 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cam03g1337 269 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1337 269 MobiDBLite consensus disorder prediction 226 249 - -
Cam03g1337 269 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2570 Cam-Chr1:37351303 Cam03g1337 Cam-Chr3:27336637 6.00E-22 dispersed
Cam03g1337 Cam-Chr3:27336637 Cam09g0407 Cam-Chr9:4416948 7.90E-25 dispersed
Cam11g0167 Cam-Chr11:3258625 Cam03g1337 Cam-Chr3:27336637 2.00E-24 transposed
Cam02g2393 Cam-Chr2:36411603 Cam03g1337 Cam-Chr3:27336637 9.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51687 PF02045 CBFB_NFYA 1.70E-25 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1337 K08064 - csv:101212860 500.36