Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1366 ATGGTGAACCCACCACTCCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGAAACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCAATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGAGTCGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGAAGAGTTCACCTCTCGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGGCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCTAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCAGTGAAGCACATGGAGTATTGTCGGGACTAGGAGAAGCAGCCACAGGGACATTTGCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCAAAGAAAGCAATGCAAAATGCCGAGATTCACCCGCTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTTGGAAAGTACATCACCTTTAGCTCGTAGATTATTAATGCTGTTATCGTCTTTAGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGTGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.54 MVNPPLPLQQISPKMAATNTNVAGNVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMINSDDSKTKNDRLDAAEKVILRWDTNSDVSSRSFNWEDSRDEAAEYLSAVDDILQLMEELSIGSESTDIVDRAENAIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLISEAHGVLSGLGEAATGTFAEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQLESTSPLARRLLMLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSDLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27853344 27855341 - CaPI482276_03g013660.1 Cam03g1366 123632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1366 665 Gene3D Exocyst complex component Exo70 86 657 - -
Cam03g1366 665 FunFam Exocyst subunit Exo70 family protein 97 658 - -
Cam03g1366 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 68 653 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cam03g1366 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
Cam03g1366 665 Pfam Exo70 exocyst complex subunit C-terminal 289 648 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cam03g1366 665 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1366 K07195 - - csv:101205970 1131.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0045 Cam-Chr3:1378952 Cam03g1366 Cam-Chr3:27853344 3.90E-107 dispersed
Cam03g0370 Cam-Chr3:4829495 Cam03g1366 Cam-Chr3:27853344 9.70E-242 dispersed
Cam03g1366 Cam-Chr3:27853344 Cam07g1654 Cam-Chr7:31101491 5.00E-121 dispersed
Cam03g1366 Cam-Chr3:27853344 Cam02g2134 Cam-Chr2:34116291 1.90E-88 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2389 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.0e-283 972.6
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G03540 71.3 2.0e-266 915.2
Cam01g1543 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 3.7e-299 1023.8
Cam05g2389 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.5e-271 932.2
Cam01g1543 . 145 631 EXO70 exocyst subunit family AT5G52350 63.7 2.8e-176 615.5
Cam05g2389 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 2.9e-165 578.9
Cam03g0045 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cam03g0045 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cam07g1557 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.5e-175 611.7
Cam01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.7 2.6e-189 659.1
Cam07g1113 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.6e-217 751.1
Cam07g1113 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cam07g1113 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.3e-219 756.9
Cam03g1366 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 3.5e-226 781.6
Cam03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 6.3e-212 734.2
Cam08g1718 . 11 682 EXO70 exocyst subunit family AT4G31540 73.7 2.1e-295 1011.5
Cam10g2045 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74