Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1400 ATGGAAGACGAAGCCTCCTCCAGCTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTCAGTATGATCAAAGACGGGTCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACAGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGCAAAGCGTATTAGGCTATTTGGAGTGCATATTGATTGA 1083 44.78 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTQSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSESSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGAKRIRLFGVHID 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28510572 28511654 - CaPI482276_03g014000.1 Cam03g1400 123666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1400 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1400 360 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cam03g1400 360 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cam03g1400 360 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1400 360 Gene3D - 164 295 IPR015300 -
Cam03g1400 360 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1400 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cam03g1400 360 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Cam03g1400 360 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Cam03g1400 360 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
Cam03g1400 360 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cam03g1400 360 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1400 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 359 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1400 Cam-Chr3:28510572 Cam06g1364 Cam-Chr6:25088330 2.70E-81 dispersed
Cam03g1400 Cam-Chr3:28510572 Cam05g2502 Cam-Chr5:32833227 5.10E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51690 PF02362 B3 1.30E-26 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1400 K09287 - csv:101219913 644.039