Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1412 ATGGTGCTTTGGCCGTGGCATGATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGCTTATGGATATTTTTGGTCATGACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTATTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGACAACATTTCTTTATGCGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCCGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGTTACTATGTTGGACGTGGGATGTATGAGAGGACTATTGACTTTATCAAGCTCTGGATATTGATGAGAATATTAGCACATCTGACAACCAAAAGGCTTGGTTAG 660 40.0 MVLWPWHDMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTLLEVLSLGPTFIVMKLIESVLDILMMYGAYSTSWRLFVSRILRFLWFSTASASTTFLYAKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLNILMHIPACRLLTNQCDWWPLVRFFKWMRQERYYVGRGMYERTIDFIKLWILMRILAHLTTKRLG 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28732790 28735479 + CaPI482276_03g014120.1 Cam03g1412 123678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1412 219 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 13 206 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1412 K11000 - - csv:101216435 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1412 Cam-Chr3:28732790 Cam03g1419 Cam-Chr3:28828612 3.10E-96 dispersed
Cam03g1408 Cam-Chr3:28622288 Cam03g1412 Cam-Chr3:28732790 8.30E-97 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g1150 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cam05g1861 . 1 1082 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cam04g0378 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cam08g0204 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cam01g1613 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.7
Cam06g0079 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.3 0.0e+00 1393.6
Cam09g0410 . 12 1046 Cell Wall Biosynthesis AT5G17420 66.9 0.0e+00 1377.5
Cam03g0686 . 338 1313 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.8
Cam03g1408 . 33 1869 Cell Wall Biosynthesis AT3G07160 76.9 0.0e+00 2847.4
Cam06g1915 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2345.5
Cam03g1414 . 51 1269 Cell Wall Biosynthesis AT3G07160 69.5 0.0e+00 1655.6
Cam03g1419 . 1 1116 Cell Wall Biosynthesis AT3G07160 64.4 0.0e+00 1400.6
Cam03g1420 . 12 694 Cell Wall Biosynthesis AT3G07160 79.4 0.0e+00 1090.9
Cam03g1410 . 67 426 Cell Wall Biosynthesis AT3G07160 63.1 2.1e-119 428.3
Cam03g1412 . 11 202 Cell Wall Biosynthesis AT3G07160 66.5 2.4e-67 255.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117