Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1419 ATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGCAATGGGAAAGGGTACGGGTAGTTTTAGAAAGAGGAGGAACAAGACCCATACTCTCTATGTGCGGTGTGGCCACCGCAACTTCCATCTCCAGAAGAGTTGCTGTGCAGCCTGTGCTTTCACTGTTGCTCGCAAGTACTTGCACCACGTTCCGCATAGATTTAAGAGCGGCTTCAGAGAGGGTATTGAAGCTGCACCCATGAATACAGGAGCTGTAGCATCAGCGTTGGAATGGAAAACGTTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATAGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCCGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAAATAGTCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGGTTGTTATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAAGCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGCCTTCGAATCGGTCATCAAGTCAGGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACAGGAATGTTACCACGCCATTAAGCTTATCTTAACGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACATTCAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTTGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGCTTTACCTGCAAAAAATTTATCCAGATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAATCCTAATGACATCCTTGCATTGCGATTTTGGGCCTCTTATCGAGGACAAACATTAGCAAGAACAGCCCCAAATAATGCAATTCCAGTCCAAGAACAGCTCATCAAAACCCGAACGTACTAG 3405 40.21 MTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSAMGKGTGSFRKRRNKTHTLYVRCGHRNFHLQKSCCAACAFTVARKYLHHVPHRFKSGFREGIEAAPMNTGAVASALEWKTLKRKKGFATLKVLAIVLKQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKNSHNALTILSLWAPVVVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFKRFPGAFMDTLHVPLQDRLGPSNRSSSQVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVQECYHAIKLILTELLVGEGRMWVERVFEDIQASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVCQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLLYLQKIYPDEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTAPNNAIPVQEQLIKTRTY 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28828612 28879942 + CaPI482276_03g014190.1 Cam03g1419 123685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1419 1134 Gene3D - 56 105 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam03g1419 1134 SMART FKS1_dom1_2 311 423 IPR026899 -
Cam03g1419 1134 Pfam 1,3-beta-glucan synthase component 1002 1116 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cam03g1419 1134 Pfam Ribosomal protein L37e 58 100 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam03g1419 1134 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 313 420 IPR026899 -
Cam03g1419 1134 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 15 1116 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cam03g1419 1134 SUPERFAMILY Zn-binding ribosomal proteins 57 100 IPR011332 GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1419 K11000 - - csv:101216435 1758.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1410 Cam-Chr3:28700618 Cam03g1419 Cam-Chr3:28828612 8.40E-122 dispersed
Cam03g1412 Cam-Chr3:28732790 Cam03g1419 Cam-Chr3:28828612 3.10E-96 dispersed
Cam03g1419 Cam-Chr3:28828612 Cam06g1915 Cam-Chr6:30084644 0.00E+00 dispersed
Cam03g1414 Cam-Chr3:28770165 Cam03g1419 Cam-Chr3:28828612 9.70E-190 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g115 . . . . . . Bma14g00713 . Cmo10g01015 Cmo11g00826 . . . . . . . Bhi02g01627 Tan09g0908 . . Hepe09g1050 . . . . . . . . . . . . . Lsi06g00460 . . . . . . . . . . . . . . Cma11g00821 . . . . Cpe04g00948 . . . . . . . Cla03g01336 Cam03g1419 Cec03g1452 Cco03g1444 Clacu03g1439 Cmu03g1995 Cre03g1670 . . Chy02g01392 Cme02g00458
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g1150 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cam05g1861 . 1 1082 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cam04g0378 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cam08g0204 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cam01g1613 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.7
Cam06g0079 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.3 0.0e+00 1393.6
Cam09g0410 . 12 1046 Cell Wall Biosynthesis AT5G17420 66.9 0.0e+00 1377.5
Cam03g0686 . 338 1313 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.8
Cam03g1408 . 33 1869 Cell Wall Biosynthesis AT3G07160 76.9 0.0e+00 2847.4
Cam06g1915 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2345.5
Cam03g1414 . 51 1269 Cell Wall Biosynthesis AT3G07160 69.5 0.0e+00 1655.6
Cam03g1419 . 1 1116 Cell Wall Biosynthesis AT3G07160 64.4 0.0e+00 1400.6
Cam03g1420 . 12 694 Cell Wall Biosynthesis AT3G07160 79.4 0.0e+00 1090.9
Cam03g1410 . 67 426 Cell Wall Biosynthesis AT3G07160 63.1 2.1e-119 428.3
Cam03g1412 . 11 202 Cell Wall Biosynthesis AT3G07160 66.5 2.4e-67 255.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117