Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1419 ATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGCAATGGGAAAGGGTACGGGTAGTTTTAGAAAGAGGAGGAACAAGACCCATACTCTCTATGTGCGGTGTGGCCACCGCAACTTCCATCTCCAGAAGAGTTGCTGTGCAGCCTGTGCTTTCACTGTTGCTCGCAAGTACTTGCACCACGTTCCGCATAGATTTAAGAGCGGCTTCAGAGAGGGTATTGAAGCTGCACCCATGAATACAGGAGCTGTAGCATCAGCGTTGGAATGGAAAACGTTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATAGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCCGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAAATAGTCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGGTTGTTATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAAGCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGCCTTCGAATCGGTCATCAAGTCAGGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACAGGAATGTTACCACGCCATTAAGCTTATCTTAACGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACATTCAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTTGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGCTTTACCTGCAAAAAATTTATCCAGATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAATCCTAATGACATCCTTGCATTGCGATTTTGGGCCTCTTATCGAGGACAAACATTAGCAAGAACAGCCCCAAATAATGCAATTCCAGTCCAAGAACAGCTCATCAAAACCCGAACGTACTAG 3405 40.21 MTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSAMGKGTGSFRKRRNKTHTLYVRCGHRNFHLQKSCCAACAFTVARKYLHHVPHRFKSGFREGIEAAPMNTGAVASALEWKTLKRKKGFATLKVLAIVLKQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKNSHNALTILSLWAPVVVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFKRFPGAFMDTLHVPLQDRLGPSNRSSSQVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVQECYHAIKLILTELLVGEGRMWVERVFEDIQASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVCQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLLYLQKIYPDEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTAPNNAIPVQEQLIKTRTY 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28828612 28879942 + CaPI482276_03g014190.1 Cam03g1419 123685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1419 1134 Gene3D - 56 105 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam03g1419 1134 SMART FKS1_dom1_2 311 423 IPR026899 -
Cam03g1419 1134 Pfam 1,3-beta-glucan synthase component 1002 1116 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cam03g1419 1134 Pfam Ribosomal protein L37e 58 100 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cam03g1419 1134 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 313 420 IPR026899 -
Cam03g1419 1134 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 15 1116 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cam03g1419 1134 SUPERFAMILY Zn-binding ribosomal proteins 57 100 IPR011332 GO:0006412(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1410 Cam-Chr3:28700618 Cam03g1419 Cam-Chr3:28828612 8.40E-122 dispersed
Cam03g1412 Cam-Chr3:28732790 Cam03g1419 Cam-Chr3:28828612 3.10E-96 dispersed
Cam03g1419 Cam-Chr3:28828612 Cam06g1915 Cam-Chr6:30084644 0.00E+00 dispersed
Cam03g1414 Cam-Chr3:28770165 Cam03g1419 Cam-Chr3:28828612 9.70E-190 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1419 K11000 - csv:101216435 1758.81