Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1431 ATGTTCGGGATGGCGGCGGAGGCAGTGACGACCGTGGTGGTCGTGGTGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTCGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATACTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGGTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATATTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAATATTTCCATGGCTAATTCCTTCTTCTAA 513 41.52 MFGMAAEAVTTVVVVVVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVGVFVEEYSPPISPPNLPNISPSLHSLIWPFSLLLSINISMANSFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29175058 29176197 - CaPI482276_03g014310.1 Cam03g1431 123697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1431 170 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Cam03g1431 170 PANTHER BLUE COPPER PROTEIN 14 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cam03g1431 170 FunFam Lamin-like protein 29 132 - -
Cam03g1431 170 Gene3D - 31 133 IPR008972 -
Cam03g1431 170 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Cam03g1431 170 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1431 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1431 Cam-Chr3:29175058 Cam10g1524 Cam-Chr10:28959721 4.40E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g1523 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 5.1e-38 154.5
Cam08g1838 . 7 169 Phytocyanin Superfamily AT2G25060 54.3 1.8e-44 176.0
Cam10g1523 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.7e-47 184.5
Cam08g1838 . 16 171 Phytocyanin Superfamily AT4G31840 55.8 9.2e-46 180.3
Cam04g1169 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.3e-37 151.0
Cam04g1169 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.3e-37 151.0
Cam08g1838 . 9 176 Phytocyanin Superfamily AT5G25090 50.9 1.1e-38 156.8
Cam08g1838 . 7 169 Phytocyanin Superfamily AT2G25060 54.3 1.8e-44 176.0
Cam08g1838 . 16 171 Phytocyanin Superfamily AT4G31840 55.8 9.2e-46 180.3
Cam10g1523 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 5.1e-38 154.5
Cam10g1523 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.7e-47 184.5
Cam02g2342 . 11 229 Phytocyanin Superfamily AT1G08500 55.5 1.4e-62 236.5
Cam03g1431 . 29 140 Phytocyanin Superfamily AT2G27035 58.9 7.7e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49