Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1506 ATGGCCGCAGCTCAGCTCACTGGCTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGGGGGCAAAAGGAAACCGCTATCTATCGCCGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAACGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCTGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAATTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGAAGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGGTATGTATGTGACATGTACATGATATTTTGTTGCTACCTTGTCATTGGCAGAGGCAAAATTAATGTAAAGGATATAAGCCTGAGAAACTCGGTAGCTTGTTTGGGAATGTTTGGCAAGACTGTTGTCTGTTCTTTGGCTCCAAACTTGTTCATAGGTGCTTCTCTTTTAGATGCTGTGATTGTGATCAGCTCCAAAATGGTGGCCAGTCTTGCTCTAGTCCGATCTTCACTCGGAAGAAGAAGGTCGCCATTGAAACTCGATGCCGATGGATTAGAAGCGTCCTCTCTTTCAATCGATGCCATTGCCAAACCTTCTAGAATAGGTCCGCGATGCTCTTATGAAGAAAGCGTGAAATTAGACGAAAATCATCGATGTCGCTTCGAAAACAAAGCAAAAGATTTGGAGTACATGAAGAGATAA 2235 43.04 MAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEGGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLCRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGNSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKEGVNVYMMKWDSDHGLMIINHYDYRYVCDMYMIFCCYLVIGRGKINVKDISLRNSVACLGMFGKTVVCSLAPNLFIGASLLDAVIVISSKMVASLALVRSSLGRRRSPLKLDADGLEASSLSIDAIAKPSRIGPRCSYEESVKLDENHRCRFENKAKDLEYMKR 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30026728 30039412 - CaPI482276_03g015060.1 Cam03g1506 123772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1506 744 CDD cpn10 162 249 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 SMART Cpn10_2 161 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 SMART Cpn10_2 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cam03g1506 744 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 Pfam Chaperonin 10 Kd subunit 162 249 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 FunFam 10 kDa chaperonin 160 250 - -
Cam03g1506 744 SUPERFAMILY GroES-like 161 249 IPR011032 -
Cam03g1506 744 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cam03g1506 744 PANTHER EXPRESSED PROTEIN 311 554 - -
Cam03g1506 744 CDD cpn10 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457(InterPro)
Cam03g1506 744 Gene3D GroES chaperonin 158 250 IPR037124 GO:0006457(InterPro)
Cam03g1506 744 FunFam 20 kDa chaperonin, chloroplastic 57 156 - -
Cam03g1506 744 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cam03g1506 744 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1506 Cam-Chr3:30026728 Cam06g0225 Cam-Chr6:4050050 5.70E-41 dispersed
Cam03g1506 Cam-Chr3:30026728 Cam05g0331 Cam-Chr5:3117416 6.00E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1506 K04078 - csv:101212396 451.825