Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g1506 | ATGGCCGCAGCTCAGCTCACTGGCTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGGGGGCAAAAGGAAACCGCTATCTATCGCCGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAACGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCTGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAATTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGAAGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGGTATGTATGTGACATGTACATGATATTTTGTTGCTACCTTGTCATTGGCAGAGGCAAAATTAATGTAAAGGATATAAGCCTGAGAAACTCGGTAGCTTGTTTGGGAATGTTTGGCAAGACTGTTGTCTGTTCTTTGGCTCCAAACTTGTTCATAGGTGCTTCTCTTTTAGATGCTGTGATTGTGATCAGCTCCAAAATGGTGGCCAGTCTTGCTCTAGTCCGATCTTCACTCGGAAGAAGAAGGTCGCCATTGAAACTCGATGCCGATGGATTAGAAGCGTCCTCTCTTTCAATCGATGCCATTGCCAAACCTTCTAGAATAGGTCCGCGATGCTCTTATGAAGAAAGCGTGAAATTAGACGAAAATCATCGATGTCGCTTCGAAAACAAAGCAAAAGATTTGGAGTACATGAAGAGATAA | 2235 | 43.04 | MAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEGGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLCRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGNSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKEGVNVYMMKWDSDHGLMIINHYDYRYVCDMYMIFCCYLVIGRGKINVKDISLRNSVACLGMFGKTVVCSLAPNLFIGASLLDAVIVISSKMVASLALVRSSLGRRRSPLKLDADGLEASSLSIDAIAKPSRIGPRCSYEESVKLDENHRCRFENKAKDLEYMKR | 744 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30026728 | 30039412 | - | CaPI482276_03g015060.1 | Cam03g1506 | 123772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g1506 | 744 | CDD | cpn10 | 162 | 249 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | SMART | Cpn10_2 | 161 | 253 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | SMART | Cpn10_2 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | ProSitePatterns | Chaperonins cpn10 signature. | 162 | 186 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
Cam03g1506 | 744 | Hamap | Co-chaperonin GroES [groES]. | 63 | 155 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | Pfam | Chaperonin 10 Kd subunit | 64 | 153 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | Pfam | Chaperonin 10 Kd subunit | 162 | 249 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | FunFam | 10 kDa chaperonin | 160 | 250 | - | - | |
Cam03g1506 | 744 | SUPERFAMILY | GroES-like | 161 | 249 | IPR011032 | - | |
Cam03g1506 | 744 | PRINTS | 10kDa chaperonin signature | 64 | 79 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | PRINTS | 10kDa chaperonin signature | 86 | 107 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | PRINTS | 10kDa chaperonin signature | 120 | 132 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | PRINTS | 10kDa chaperonin signature | 141 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | SUPERFAMILY | GroES-like | 62 | 155 | IPR011032 | - | |
Cam03g1506 | 744 | PANTHER | EXPRESSED PROTEIN | 311 | 554 | - | - | |
Cam03g1506 | 744 | CDD | cpn10 | 63 | 154 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | Gene3D | GroES chaperonin | 57 | 157 | IPR037124 | GO:0006457(InterPro) | |
Cam03g1506 | 744 | Gene3D | GroES chaperonin | 158 | 250 | IPR037124 | GO:0006457(InterPro) | |
Cam03g1506 | 744 | FunFam | 20 kDa chaperonin, chloroplastic | 57 | 156 | - | - | |
Cam03g1506 | 744 | Hamap | Co-chaperonin GroES [groES]. | 161 | 255 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Cam03g1506 | 744 | ProSitePatterns | Chaperonins cpn10 signature. | 64 | 88 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1506 | Cam-Chr3:30026728 | Cam06g0225 | Cam-Chr6:4050050 | 5.70E-41 | dispersed | |
Cam03g1506 | Cam-Chr3:30026728 | Cam05g0331 | Cam-Chr5:3117416 | 6.00E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g1506 | K04078 | - | csv:101212396 | 451.825 |