Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1507 ATGACGAAGCCGTCGTCCCCTCACAAATCCTCCGTCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.49 MTKPSSPHKSSVAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30052059 30052676 + CaPI482276_03g015070.1 Cam03g1507 123773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1507 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 MobiDBLite consensus disorder prediction 1 26 - -
Cam03g1507 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Cam03g1507 205 MobiDBLite consensus disorder prediction 1 17 - -
Cam03g1507 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 126 IPR051032 -
Cam03g1507 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam03g1507 205 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Cam03g1507 205 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1507 Cam-Chr3:30052059 Cam08g0990 Cam-Chr8:15957760 4.00E-21 dispersed
Cam05g1753 Cam-Chr5:26173880 Cam03g1507 Cam-Chr3:30052059 4.10E-31 transposed
Cam08g1424 Cam-Chr8:20521513 Cam03g1507 Cam-Chr3:30052059 2.00E-34 transposed
Cam03g1507 Cam-Chr3:30052059 Cam07g1126 Cam-Chr7:25753324 1.90E-15 wgd
Cam03g1507 Cam-Chr3:30052059 Cam09g0128 Cam-Chr9:2098213 6.70E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51695 PF00847 AP2 8.10E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1507 - - - 0.0