Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1518 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTCATTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCTGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACACGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCGAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAGGCGGCGAGTTCTGAATCTTTCAACATAAAGGAGTTCGTTCAAAAGACGGAGGGGACTCATGCATAG 1149 46.82 MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKAASSESFNIKEFVQKTEGTHA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30146619 30149853 + CaPI482276_03g015180.1 Cam03g1518 123784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1518 382 Gene3D - 15 172 IPR027363 -
Cam03g1518 382 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
Cam03g1518 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Cam03g1518 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Cam03g1518 382 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 368 IPR005251 -
Cam03g1518 382 Gene3D - 173 378 IPR042529 -
Cam03g1518 382 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 375 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Cam03g1518 382 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
Cam03g1518 382 FunFam Methylthioribose-1-phosphate isomerase 173 371 - -
Cam03g1518 382 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 363 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1518 Cam-Chr3:30146619 Cam09g0693 Cam-Chr9:6899857 1.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1518 K08963 - csv:101210526 681.019