Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1536 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGCTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCATCGTTACTCTCCTATCGGCCCTTCCACGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCACCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGAAGCAACGAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTTGATGATAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 999 42.94 MSARSMFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFHGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRSPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSTSLQSDQSCYQLHQSLKDPLKQRKRDESQKTVHRFFDEWPPKERGSWLDFDDKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30309457 30310615 + CaPI482276_03g015360.1 Cam03g1536 123802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1536 332 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam03g1536 332 PANTHER GROWTH-REGULATING FACTOR 5 2 319 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cam03g1536 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cam03g1536 332 Pfam WRC 77 118 IPR014977 -
Cam03g1536 332 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam03g1536 332 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1536 Cam-Chr3:30309457 Cam08g2143 Cam-Chr8:26813217 2.00E-33 dispersed
Cam02g0795 Cam-Chr2:9989502 Cam03g1536 Cam-Chr3:30309457 5.20E-50 transposed
Cam10g1886 Cam-Chr10:32929029 Cam03g1536 Cam-Chr3:30309457 2.60E-30 transposed
Cam11g0157 Cam-Chr11:3196545 Cam03g1536 Cam-Chr3:30309457 2.30E-78 wgd
Cam03g1536 Cam-Chr3:30309457 Cam07g1156 Cam-Chr7:25927467 1.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51698 PF08879 WRC 1.10E-20 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1536 - - - 0.0