Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1541 ATGGCGAATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAGGGTGAAGAAGGAGTTGATGCAAGTAAAGATCTCACTAAACCCTCAGTTGGTTCTTTCCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGTACAATTCCACAATCCGTAGTTGGGAGTTCTCCTTCACCTGAGATTTCCAGAATGACTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGGCGCCCATCATTTGCTCGTTCATCGTTTTCGAAGCCAAAGTCAAGACTAATAGAGTCACCTTGTCCTGATGGTGCATATTTAGCAGAAGAAAAGGCTCAAGCAAAATCGACAATCTATAGCTCTTCTAAGGTGGACTCCCCAGCTAAGATAACCACAGTGACTAGTCCAAAAGAAGCTTTGAAGTCGGCCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGAAAGAAATTGAAAAGAACAGTTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGTTGTTTAATTGCTAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTGGTATTAGTTATTTTCTGCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTTCGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTGGTTCTTCTAGCCTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTCATTGGAGCAGGACTATGGCTGGTGAAAACTTTGTTGGTGAAGACACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCATCCTATCAGGACCTCCGCTCATGGAGATGGCGGAGAGGGTCGGGAGAGCGGCAAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGGAAGGAAGAGGTGATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCAGAAACGTTGCGAAACCGGGTAGCAAGTATATTGATGAAGATGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTTGAGCGCAAGTCGTTGGCTCACTCACTGAATGACACCAAGACTGCCATAGAGGAGCTAAACAAGCTTGCCTCTGCAATTATACTGATTGTGATTATCATTGAATGGCTACTTCTGATGGGTTTCTTAACGACGCAAGTACTCGTCTTCATCTCATCACAGCTTCTGCTCGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTATTCGAAGCCATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATCAGTAACTACTACCGGAGCCCCGAAATGGGTGATTCGATCGAATTTTCTGTTGACTTTTCCACTTCAATTGAGAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACATAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTGTCGTAGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTAGCTCTATGTGTCAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAGTCGAAGATCGGATTTAGTCTTCGAGCTGAAGAGAATTCTCGAAGATCTCGGTATCAAGTATCATCTGCTACCTCAAGAAGTTCATCTCAACTATGTGGGTTCAGCAGCTCCAGTGATTCCACCCTCTCAAAGATGA 2298 41.6 MANKKGMEQLVLRILEGEEGVDASKDLTKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSPEISRMTPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDGAYLAEEKAQAKSTIYSSSKVDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWVAFLCLTGCLIASLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKKGNEILNYVTRALGASLIGAGLWLVKTLLVKTLAASFQCARFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAIILIVIIIEWLLLMGFLTTQVLVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMGDSIEFSVDFSTSIESIGALKARIKTYIESKPQFWRPNHSVVVKEIENVNKMKLALCVNHTINFQNYGDKSSRRSDLVFELKRILEDLGIKYHLLPQEVHLNYVGSAAPVIPPSQR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30366165 30368901 - CaPI482276_03g015410.1 Cam03g1541 123807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1541 765 Gene3D - 594 643 IPR023408 -
Cam03g1541 765 Pfam Mechanosensitive ion channel, beta-domain 587 644 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam03g1541 765 SUPERFAMILY Sm-like ribonucleoproteins 584 643 IPR010920 -
Cam03g1541 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 73 752 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cam03g1541 765 MobiDBLite consensus disorder prediction 51 97 - -
Cam03g1541 765 FunFam Predicted mechanosensitive ion channel 594 643 - -
Cam03g1541 765 PIRSF Memb_At2g17000 24 764 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0406 Cam-Chr2:4798383 Cam03g1541 Cam-Chr3:30366165 1.90E-150 dispersed
Cam03g1541 Cam-Chr3:30366165 Cam05g1732 Cam-Chr5:25888696 3.70E-184 dispersed
Cam03g1541 Cam-Chr3:30366165 Cam02g1162 Cam-Chr2:22735526 2.10E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1541 K22048 - csv:101209209 1360.13