Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1546 ATGGCCAACTCTGAATTTCTCTGCTCCGCAGCTCTCTCTGAAACCGATTTTGTTCCTCAATCAAAATCCTTTTCCTCTGTTTCGGCCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTATCGCATGTTGTCGGAGTTTCAAGAGGCTCAAACTGTTGATATCGAAGGCACCACCCTCACCGTCGCTCAGGTGACCGCCGTTGCTCGTCGAAGCGATGTCAAAGTCGTCCTGAATGAAGCTGTGGCACATGATCGTGTGGCCAACAGTGCAAAATGGATTGCTGAGAAAATCTCTAAGGGAATTGATATTTATGGAGTTACCACTGGCTTTGGTGCCACCTCCCACCGGCGTACGACCAAACTGGCCGATCTCCAAACAGAACTCATTAGATTCCTCAATGCCGGAGTCATCAGAAAAGACAATCTTCCATCTACCTACTCAAAGGCGGCCATGCTTGTCAGAACAAACACATTGATGCAAGGCTACTCAGGCATTCGTTGGAAAATTCTCGAGGCTGTGGTGAAGCTCATGAATGAGAACTTGATCCCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCACTGTCTTATATTGCTGGTGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGCGATGAGATTACTGCCATAGAAGCTCTCAAGCGAGCTGGAATTGAAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACCGCTGTTGGGTCGGCCGTTGCTGCCACAGTTTGCTATGACGCCAACATTTTGGCTCTTTTAGCTGTCGTCCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCTGGCCAGATTGAATCCGCCGCAGCCATGGAGTTTCTCTTGGACCAAAGCGACTTTATGAAAGAAGCAAAAAGCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGTTATGCACTTCGAACATCTCCACAATGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACCCATTCGATTGAAAGGGAAATCAACTCTGTGAATGATAACCCATTAATCGACATCGATCGAGATCTAGCTCTACACGGAGGAAACTTTCAAGGAACCCCAATTGGAGTCTCCATGGATAATCTCCGAATCGCCATTGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCGGAACTCGTCTGTGATCATTACAACAATGGATTACCATCTAATTTGAGCGGCGGGCCAAACCCTAGCTTGGACTACGGCTTCAAAGGAGCGGAAATCGCCATGGCTGCTTATTGTTCTGAGCTTCAATACTTAGCAAACCCTGTCACAACCCATGTCCAAAGTGCAGAACAACATAATCAAGATGTAAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTTTGCCAGGCAATCGATTTAAGACAATACGAAGAAAATATGAGGGAAGTAGTGAAAAATGCTCTTCTACAAACCATTAAGAAAACCTTATACGTTGCAGAGTATGGATCTCTTCTCGAATCGCGATTCTGCGAGAAAGACCTATTACAAGTAATCGAGCGCGAGGCGGTCTTCTCCTACATCGACGATCCAACCAACACATCCTACACTCTAATCCCAAAATTACTGGAAGTTTTAGTCGAAAAAGCACTGAAAGGAGTTACAACAGGCAAAAGCGAGAATGAAAACGAAACAGGGATTGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAAGCGAAATTGGAGAAAGATGTCGAAAATGCGAGAGAGAGATTCGAGAATGGTGATTTCGAAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATCTACCGATTCGTGAGGTGTGAAGTGGGGACTCAACTGTTGAGTGGGGCGAAGAAAGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTGATGAAGGGAAGCTTGGAAATGCTGTGATTCAGTGTTTGAAGAATTAG 2136 45.88 MANSEFLCSAALSETDFVPQSKSFSSVSASDHWVKAANALSHTHFEEVYRMLSEFQEAQTVDIEGTTLTVAQVTAVARRSDVKVVLNEAVAHDRVANSAKWIAEKISKGIDIYGVTTGFGATSHRRTTKLADLQTELIRFLNAGVIRKDNLPSTYSKAAMLVRTNTLMQGYSGIRWKILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAIEALKRAGIEGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDFMKEAKSRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDIDRDLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTIKKTLYVAEYGSLLESRFCEKDLLQVIEREAVFSYIDDPTNTSYTLIPKLLEVLVEKALKGVTTGKSENENETGIAIFKQIPGFLEELKAKLEKDVENARERFENGDFEVENRIKKCSTYPIYRFVRCEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNAVIQCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30402102 30404237 + CaPI482276_03g015460.1 Cam03g1546 123812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1546 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cam03g1546 711 Gene3D - 528 654 IPR023144 -
Cam03g1546 711 Gene3D - 21 261 IPR024083 -
Cam03g1546 711 CDD PAL-HAL 66 525 IPR001106 -
Cam03g1546 711 Pfam Aromatic amino acid lyase 68 534 IPR001106 -
Cam03g1546 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Cam03g1546 711 PANTHER HISTIDINE AMMONIA-LYASE 27 711 IPR001106 GO:0016841(PANTHER)
Cam03g1546 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cam03g1546 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1546 Cam-Chr3:30402102 Cam04g0807 Cam-Chr4:22366293 4.50E-237 dispersed
Cam03g1546 Cam-Chr3:30402102 Cam08g1206 Cam-Chr8:18417301 6.80E-233 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1546 K10775 - csv:101205510 1255.35