Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1552 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCGCCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGATATTGACCTGTCATCTTACTTCAACGATGCAGGATCTCCACTTGCAACTTTCTAA 1068 41.48 MRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQTDPKDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30458160 30461364 + CaPI482276_03g015520.1 Cam03g1552 123818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1552 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Cam03g1552 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
Cam03g1552 355 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cam03g1552 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Cam03g1552 355 PRINTS Tyrosine kinase catalytic domain signature 146 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 PRINTS Tyrosine kinase catalytic domain signature 183 201 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 PRINTS Tyrosine kinase catalytic domain signature 249 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Cam03g1552 355 CDD PKc_MAPKK_plant_like 69 335 - -
Cam03g1552 355 FunFam Mitogen-activated protein kinase kinase 6 152 350 - -
Cam03g1552 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cam03g1552 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g1552 355 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1552 K20603 - - csv:101204545 693.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1552 Cam-Chr3:30458160 Cam11g0213 Cam-Chr11:3662268 2.90E-128 dispersed
Cam10g1289 Cam-Chr10:26343442 Cam03g1552 Cam-Chr3:30458160 1.80E-63 transposed
Cam11g1184 Cam-Chr11:23339758 Cam03g1552 Cam-Chr3:30458160 7.80E-39 transposed
Cam11g0173 Cam-Chr11:3309926 Cam03g1552 Cam-Chr3:30458160 1.00E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam03g1552 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 2.8e-136 481.9
Cam11g0173 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.3e-125 445.7
Cam11g0213 . 214 538 MAP Kinase Kinase Gene Family AT4G26070 55.8 1.9e-108 389.4
Cam03g1552 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.2e-133 472.2
Cam11g0173 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 2.9e-117 418.7
Cam11g0213 . 198 512 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cam10g1289 . 83 565 MAP Kinase Kinase Gene Family AT5G40440 78.9 3.6e-228 787.7
Cam07g1143 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cam04g1070 . 5 321 MAP Kinase Kinase Gene Family AT1G51660 52.4 6.0e-84 308.1
Cam07g1143 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cam04g1070 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.9 3.4e-84 308.9
Cam11g0213 . 189 541 MAP Kinase Kinase Gene Family AT5G56580 83.9 1.8e-170 595.5
Cam03g1552 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.9 8.7e-120 427.2
Cam11g0173 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.1 7.6e-108 387.5
Cam04g1070 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.9 3.8e-108 388.3
Cam04g1070 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.5e-80 296.6
Cam04g1070 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 66.7 4.3e-115 411.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85076 PF00069 Pkinase 4.30E-72 CL0016 Cam PK