Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1554 ATGGCGGACCGCGTGAGACAGTGCCACGTGGAAGGCCATTGCAAAAACAGGGGAAGTAATGGAAGGAACGAATCACCATTTCCCACATGTCAGGAGAAATTGAAAGAAAAAAAAGAAAAAGAAAAAAGGGCATATATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACGTTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGATATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCTGAGGTCAATGGGGAACTTGATACGCAGAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACGTACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCATTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGGGAAACCATATTGGCGTCATCAGGGGATGCTTTGTCACAGTAA 1749 42.65 MADRVRQCHVEGHCKNRGSNGRNESPFPTCQEKLKEKKEKEKRAYMENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSDINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSTTYSPDDRETILASSGDALSQ 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30477118 30485187 - CaPI482276_03g015540.1 Cam03g1554 123820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1554 582 FunFam Non-specific serine/threonine protein kinase 357 476 - -
Cam03g1554 582 MobiDBLite consensus disorder prediction 29 50 - -
Cam03g1554 582 CDD STKc_NDR_like 149 522 - -
Cam03g1554 582 Gene3D Transferase(Phosphotransferase) domain 1 235 301 - -
Cam03g1554 582 Gene3D Transferase(Phosphotransferase) domain 1 357 478 - -
Cam03g1554 582 Coils Coil 35 55 - -
Cam03g1554 582 FunFam Non-specific serine/threonine protein kinase 477 487 - -
Cam03g1554 582 CDD MobB_NDR_LATS-like 85 146 - -
Cam03g1554 582 MobiDBLite consensus disorder prediction 1 18 - -
Cam03g1554 582 FunFam Non-specific serine/threonine protein kinase 112 234 - -
Cam03g1554 582 FunFam Non-specific serine/threonine protein kinase 235 302 - -
Cam03g1554 582 Pfam Protein kinase C terminal domain 477 521 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 MobiDBLite consensus disorder prediction 1 63 - -
Cam03g1554 582 ProSiteProfiles AGC-kinase C-terminal domain profile. 459 531 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 MobiDBLite consensus disorder prediction 543 582 - -
Cam03g1554 582 Gene3D Phosphorylase Kinase; domain 1 110 234 - -
Cam03g1554 582 ProSiteProfiles Protein kinase domain profile. 151 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 SMART pkinase_C_6 459 523 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 SMART serkin_6 151 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 SUPERFAMILY Protein kinase-like (PK-like) 133 507 IPR011009 -
Cam03g1554 582 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524(InterPro)
Cam03g1554 582 Pfam Protein kinase domain 351 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 Pfam Protein kinase domain 152 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam03g1554 582 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 527 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1554 Cam-Chr3:30477118 Cam08g2069 Cam-Chr8:26225090 4.50E-166 dispersed
Cam01g0529 Cam-Chr1:5606730 Cam03g1554 Cam-Chr3:30477118 8.90E-68 transposed
Cam04g1320 Cam-Chr4:27041277 Cam03g1554 Cam-Chr3:30477118 1.50E-18 transposed
Cam06g0720 Cam-Chr6:9751194 Cam03g1554 Cam-Chr3:30477118 2.30E-184 transposed
Cam09g0779 Cam-Chr9:7915457 Cam03g1554 Cam-Chr3:30477118 7.80E-184 transposed
Cam03g1554 Cam-Chr3:30477118 Cam05g1974 Cam-Chr5:28605096 6.80E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85077 PF00069 Pkinase 5.60E-43 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1554 K08790 - csv:101208238 995.727