Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1606 ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTACTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTGGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAGTCGGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA 1149 52.22 MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPTRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK 382
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31060957 31062105 + CaPI482276_03g016060.1 Cam03g1606 123872
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1606 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872(InterPro)
Cam03g1606 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872(InterPro)
Cam03g1606 382 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
Cam03g1606 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872(InterPro)
Cam03g1606 382 MobiDBLite consensus disorder prediction 236 257 - -
Cam03g1606 382 MobiDBLite consensus disorder prediction 197 221 - -
Cam03g1606 382 PANTHER UNKEMPT FAMILY MEMBER 51 382 IPR045234 -
Cam03g1606 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872(InterPro)
Cam03g1606 382 Gene3D - 134 198 - -
Cam03g1606 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1606 Cam-Chr3:31060957 Cam05g1935 Cam-Chr5:28293110 9.60E-93 dispersed
Cam11g0200 Cam-Chr11:3522594 Cam03g1606 Cam-Chr3:31060957 9.50E-128 wgd
Cam03g1606 Cam-Chr3:31060957 Cam08g2154 Cam-Chr8:26966745 4.10E-67 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51704 PF00642 zf-CCCH 1.70E-06 CL0537 Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1606 - - - 0.0