Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam03g1654 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGTGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCATGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG 954 48.74 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQHAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31655330 31662503 - CaPI482276_03g016540.1 Cam03g1654 123920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam03g1654 317 Gene3D - 155 212 IPR036638 GO:0046983(InterPro)
Cam03g1654 317 MobiDBLite consensus disorder prediction 79 99 - -
Cam03g1654 317 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Cam03g1654 317 FunFam Basic helix-loop-helix transcription factor 157 219 - -
Cam03g1654 317 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983(InterPro)
Cam03g1654 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 221 IPR036638 GO:0046983(InterPro)
Cam03g1654 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
Cam03g1654 317 MobiDBLite consensus disorder prediction 141 166 - -
Cam03g1654 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 296 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam03g1654 317 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1654 Cam-Chr3:31655330 Cam09g0728 Cam-Chr9:7333586 1.70E-74 dispersed
Cam03g1654 Cam-Chr3:31655330 Cam02g1763 Cam-Chr2:30763674 4.00E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51709 PF00010 HLH 7.00E-08 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam03g1654 - - - 0.0