Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam03g1660 | ATGGGGTGTCTGGTTAGCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGCTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGGAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTACTCTCAGCTGAGGAGATCATGAATTGA | 1752 | 45.49 | MGCLVSREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEEIMN | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 31704886 | 31721020 | + | CaPI482276_03g016600.1 | Cam03g1660 | 123926 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 554 | 568 | - | - | |
Cam03g1660 | 583 | Coils | Coil | 41 | 68 | - | - | |
Cam03g1660 | 583 | FunFam | probable serine/threonine-protein kinase At1g54610 | 204 | 445 | - | - | |
Cam03g1660 | 583 | Pfam | Protein kinase domain | 121 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam03g1660 | 583 | CDD | STKc_CDK9_like | 121 | 405 | - | - | |
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 541 | 568 | - | - | |
Cam03g1660 | 583 | Gene3D | Phosphorylase Kinase; domain 1 | 108 | 203 | - | - | |
Cam03g1660 | 583 | PANTHER | CELL DIVISION PROTEIN KINASE | 120 | 405 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 13 | 73 | - | - | |
Cam03g1660 | 583 | SMART | serkin_6 | 121 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam03g1660 | 583 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 444 | - | - | |
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 415 | 454 | - | - | |
Cam03g1660 | 583 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 409 | IPR011009 | - | |
Cam03g1660 | 583 | FunFam | probable serine/threonine-protein kinase At1g54610 | 108 | 203 | - | - | |
Cam03g1660 | 583 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 241 | 253 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam03g1660 | 583 | ProSiteProfiles | Protein kinase domain profile. | 121 | 405 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam03g1660 | 583 | MobiDBLite | consensus disorder prediction | 423 | 454 | - | - | |
Cam03g1660 | 583 | ProSitePatterns | Protein kinases ATP-binding region signature. | 127 | 150 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1660 | Cam-Chr3:31704886 | Cam05g0674 | Cam-Chr5:5892244 | 2.30E-234 | dispersed | |
Cam03g1660 | Cam-Chr3:31704886 | Cam02g1691 | Cam-Chr2:29917626 | 8.00E-240 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85083 | PF00069 | Pkinase | 5.20E-68 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam03g1660 | K08819 | - | csv:101215893 | 1091.26 |